{ "fusions": [ { "# Long Reads": "327", "Annotations": "INTRACHROMOSOMAL[chr7:0.02Mb];NEIGHBORS[18185]", "Fusion": "ENSG00000286725--LINC03007", "Left Breakpoint": "chr7:25862144:-", "Left Gene": "ENSG00000286725", "Right Breakpoint": "chr7:25661731:-", "Right Gene": "LINC03007", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "257", "Annotations": "INTRACHROMOSOMAL[chr3:0.03Mb];NEIGHBORS[29188]", "Fusion": "ENSG00000297708--ENSG00000297753", "Left Breakpoint": "chr3:115791158:+", "Left Gene": "ENSG00000297708", "Right Breakpoint": "chr3:116007136:+", "Right Gene": "ENSG00000297753", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "177", "Annotations": "[\"GPHN:Oncogene\"];[\"DEEPEST2019\",\"TumorFusionsNAR2018\",\"ChimerSeq\",\"TCGA_StarF2019\"];INTRACHROMOSOMAL[chr14:0.18Mb]", "Fusion": "EIF2S1--GPHN", "Left Breakpoint": "chr14:67360456:+", "Left Gene": "EIF2S1", "Right Breakpoint": "chr14:67100856:+", "Right Gene": "GPHN", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "118", "Annotations": "INTRACHROMOSOMAL[chr3:0.03Mb];NEIGHBORS[29188]", "Fusion": "ENSG00000297708--ENSG00000297753", "Left Breakpoint": "chr3:115810499:+", "Left Gene": "ENSG00000297708", "Right Breakpoint": "chr3:116067929:+", "Right Gene": "ENSG00000297753", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "95", "Annotations": "INTRACHROMOSOMAL[chr3:0.03Mb];NEIGHBORS[29188]", "Fusion": "ENSG00000297708--ENSG00000297753", "Left Breakpoint": "chr3:115810499:+", "Left Gene": "ENSG00000297708", "Right Breakpoint": "chr3:116098649:+", "Right Gene": "ENSG00000297753", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "63", "Annotations": "INTRACHROMOSOMAL[chr3:0.03Mb];NEIGHBORS[29188]", "Fusion": "ENSG00000297708--ENSG00000297753", "Left Breakpoint": "chr3:115791158:+", "Left Gene": "ENSG00000297708", "Right Breakpoint": "chr3:116067929:+", "Right Gene": "ENSG00000297753", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "58", "Annotations": "INTRACHROMOSOMAL[chr3:0.03Mb];NEIGHBORS[32604]", "Fusion": "ENSG00000242009--LINC02008", "Left Breakpoint": "chr3:81953260:+", "Left Gene": "ENSG00000242009", "Right Breakpoint": "chr3:82185352:+", "Right Gene": "LINC02008", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "32", "Annotations": "INTRACHROMOSOMAL[chr5:0.19Mb]", "Fusion": "ENSG00000304371--ENSG00000293866", "Left Breakpoint": "chr5:107285894:-", "Left Gene": "ENSG00000304371", "Right Breakpoint": "chr5:107084708:-", "Right Gene": "ENSG00000293866", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "30", "Annotations": "INTRACHROMOSOMAL[chr9:0.03Mb];LOCAL_INVERSION:+:-:[26007]", "Fusion": "CNTNAP3P1--LERFS", "Left Breakpoint": "chr9:62929128:+", "Left Gene": "CNTNAP3P1", "Right Breakpoint": "chr9:62858183:-", "Right Gene": "LERFS", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "30", "Annotations": "INTRACHROMOSOMAL[chr9:23.05Mb]", "Fusion": "GLIDR--LERFS", "Left Breakpoint": "chr9:39778331:-", "Left Gene": "GLIDR", "Right Breakpoint": "chr9:62858183:-", "Right Gene": "LERFS", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "29", "Annotations": "INTRACHROMOSOMAL[chr5:1.72Mb]", "Fusion": "TRIM36--ENSG00000303596", "Left Breakpoint": "chr5:115169608:-", "Left Gene": "TRIM36", "Right Breakpoint": "chr5:116909385:-", "Right Gene": "ENSG00000303596", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "25", "Annotations": "INTRACHROMOSOMAL[chr5:1.72Mb]", "Fusion": "TRIM36--ENSG00000303596", "Left Breakpoint": "chr5:115147114:-", "Left Gene": "TRIM36", "Right Breakpoint": "chr5:116909385:-", "Right Gene": "ENSG00000303596", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "23", "Annotations": "INTRACHROMOSOMAL[chr9:23.05Mb]", "Fusion": "GLIDR--LERFS", "Left Breakpoint": "chr9:39778331:-", "Left Gene": "GLIDR", "Right Breakpoint": "chr9:62869304:-", "Right Gene": "LERFS", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "23", "Annotations": "INTRACHROMOSOMAL[chr9:0.03Mb];LOCAL_INVERSION:+:-:[26007]", "Fusion": "CNTNAP3P1--LERFS", "Left Breakpoint": "chr9:62929128:+", "Left Gene": "CNTNAP3P1", "Right Breakpoint": "chr9:62869304:-", "Right Gene": "LERFS", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "18", "Annotations": "INTRACHROMOSOMAL[chr3:0.00Mb];NEIGHBORS[3476]", "Fusion": "ENSG00000306736--TP63", "Left Breakpoint": "chr3:189597238:+", "Left Gene": "ENSG00000306736", "Right Breakpoint": "chr3:189808272:+", "Right Gene": "TP63", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "18", "Annotations": "INTRACHROMOSOMAL[chr9:4.41Mb]", "Fusion": "ENSG00000309428--ZNG1C", "Left Breakpoint": "chr9:63817907:+", "Left Gene": "ENSG00000309428", "Right Breakpoint": "chr9:68232053:+", "Right Gene": "ZNG1C", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "17", "Annotations": "INTRACHROMOSOMAL[chr3:0.03Mb];NEIGHBORS[29188]", "Fusion": "ENSG00000297708--ENSG00000297753", "Left Breakpoint": "chr3:115791158:+", "Left Gene": "ENSG00000297708", "Right Breakpoint": "chr3:116098649:+", "Right Gene": "ENSG00000297753", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "16", "Annotations": "[\"NONO:Oncogene\"];INTERCHROMOSOMAL[chr14--chrX]", "Fusion": "ENSG00000282885--NONO", "Left Breakpoint": "chr14:49862602:-", "Left Gene": "ENSG00000282885", "Right Breakpoint": "chrX:71300465:+", "Right Gene": "NONO", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "16", "Annotations": "[\"NONO:Oncogene\"];INTERCHROMOSOMAL[chr14--chrX]", "Fusion": "RN7SL1--NONO", "Left Breakpoint": "chr14:49586827:+", "Left Gene": "RN7SL1", "Right Breakpoint": "chrX:71300465:+", "Right Gene": "NONO", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "16", "Annotations": "[\"NONO:Oncogene\"];INTERCHROMOSOMAL[chr14--chrX]", "Fusion": "RN7SL2--NONO", "Left Breakpoint": "chr14:49862602:-", "Left Gene": "RN7SL2", "Right Breakpoint": "chrX:71300465:+", "Right Gene": "NONO", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "16", "Annotations": "INTRACHROMOSOMAL[chr5:1.72Mb]", "Fusion": "TRIM36--ENSG00000303596", "Left Breakpoint": "chr5:115169608:-", "Left Gene": "TRIM36", "Right Breakpoint": "chr5:116902672:-", "Right Gene": "ENSG00000303596", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "15", "Annotations": "INTRACHROMOSOMAL[chr5:0.26Mb]", "Fusion": "ENSG00000299385--ENSG00000308925", "Left Breakpoint": "chr5:86562574:-", "Left Gene": "ENSG00000299385", "Right Breakpoint": "chr5:86217150:-", "Right Gene": "ENSG00000308925", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "14", "Annotations": "INTERCHROMOSOMAL[chr14--chr17]", "Fusion": "RN7SL2--SNHG29", "Left Breakpoint": "chr14:49862594:-", "Left Gene": "RN7SL2", "Right Breakpoint": "chr17:16441615:+", "Right Gene": "SNHG29", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "14", "Annotations": "INTERCHROMOSOMAL[chr14--chr17]", "Fusion": "RN7SL1--SNHG29", "Left Breakpoint": "chr14:49586835:+", "Left Gene": "RN7SL1", "Right Breakpoint": "chr17:16441615:+", "Right Gene": "SNHG29", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "14", "Annotations": "INTERCHROMOSOMAL[chr14--chr17]", "Fusion": "ENSG00000282885--SNHG29", "Left Breakpoint": "chr14:49862594:-", "Left Gene": "ENSG00000282885", "Right Breakpoint": "chr17:16441615:+", "Right Gene": "SNHG29", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "13", "Annotations": "[\"NONO:Oncogene\"];INTERCHROMOSOMAL[chr14--chrX]", "Fusion": "ENSG00000282885--NONO", "Left Breakpoint": "chr14:49862616:-", "Left Gene": "ENSG00000282885", "Right Breakpoint": "chrX:71300474:+", "Right Gene": "NONO", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "13", "Annotations": "[\"NONO:Oncogene\"];INTERCHROMOSOMAL[chr14--chrX]", "Fusion": "RN7SL1--NONO", "Left Breakpoint": "chr14:49586813:+", "Left Gene": "RN7SL1", "Right Breakpoint": "chrX:71300474:+", "Right Gene": "NONO", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "13", "Annotations": "[\"NONO:Oncogene\"];INTERCHROMOSOMAL[chr14--chrX]", "Fusion": "RN7SL2--NONO", "Left Breakpoint": "chr14:49862616:-", "Left Gene": "RN7SL2", "Right Breakpoint": "chrX:71300474:+", "Right Gene": "NONO", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "12", "Annotations": "[\"NONO:Oncogene\"];INTERCHROMOSOMAL[chr14--chrX]", "Fusion": "ENSG00000282885--NONO", "Left Breakpoint": "chr14:49862627:-", "Left Gene": "ENSG00000282885", "Right Breakpoint": "chrX:71300462:+", "Right Gene": "NONO", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "12", "Annotations": "[\"NONO:Oncogene\"];INTERCHROMOSOMAL[chr14--chrX]", "Fusion": "RN7SL1--NONO", "Left Breakpoint": "chr14:49586802:+", "Left Gene": "RN7SL1", "Right Breakpoint": "chrX:71300462:+", "Right Gene": "NONO", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "12", "Annotations": "[\"NONO:Oncogene\"];INTERCHROMOSOMAL[chr14--chrX]", "Fusion": "RN7SL2--NONO", "Left Breakpoint": "chr14:49862627:-", "Left Gene": "RN7SL2", "Right Breakpoint": "chrX:71300462:+", "Right Gene": "NONO", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "11", "Annotations": "INTRACHROMOSOMAL[chr15:0.06Mb];NEIGHBORS[59693]", "Fusion": "DPH6-DT--LINC02853", "Left Breakpoint": "chr15:35711889:+", "Left Gene": "DPH6-DT", "Right Breakpoint": "chr15:36049102:+", "Right Gene": "LINC02853", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "11", "Annotations": "INTRACHROMOSOMAL[chr5:0.15Mb]", "Fusion": "ENSG00000300109--ENSG00000300022", "Left Breakpoint": "chr5:70495024:-", "Left Gene": "ENSG00000300109", "Right Breakpoint": "chr5:70225795:-", "Right Gene": "ENSG00000300022", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "10", "Annotations": "INTRACHROMOSOMAL[chr3:0.20Mb]", "Fusion": "ENSG00000297753--LSAMP-AS1", "Left Breakpoint": "chr3:116007285:+", "Left Gene": "ENSG00000297753", "Right Breakpoint": "chr3:116299635:+", "Right Gene": "LSAMP-AS1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "9", "Annotations": "INTRACHROMOSOMAL[chr5:0.17Mb]", "Fusion": "GUSBP13--ENSG00000300022", "Left Breakpoint": "chr5:69916255:+", "Left Gene": "GUSBP13", "Right Breakpoint": "chr5:70225795:-", "Right Gene": "ENSG00000300022", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "9", "Annotations": "INTRACHROMOSOMAL[chr3:0.18Mb]", "Fusion": "ENSG00000309799--LINC02008", "Left Breakpoint": "chr3:81809941:+", "Left Gene": "ENSG00000309799", "Right Breakpoint": "chr3:82185242:+", "Right Gene": "LINC02008", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "9", "Annotations": "INTRACHROMOSOMAL[chr5:0.26Mb]", "Fusion": "ENSG00000299385--ENSG00000308925", "Left Breakpoint": "chr5:86553345:-", "Left Gene": "ENSG00000299385", "Right Breakpoint": "chr5:86217150:-", "Right Gene": "ENSG00000308925", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "8", "Annotations": "INTERCHROMOSOMAL[chr14--chr17]", "Fusion": "ENSG00000282885--SNHG29", "Left Breakpoint": "chr14:49862641:-", "Left Gene": "ENSG00000282885", "Right Breakpoint": "chr17:16441714:+", "Right Gene": "SNHG29", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "8", "Annotations": "INTRACHROMOSOMAL[chr5:0.83Mb]", "Fusion": "ENSG00000296329--ENSG00000300022", "Left Breakpoint": "chr5:71202253:-", "Left Gene": "ENSG00000296329", "Right Breakpoint": "chr5:70225795:-", "Right Gene": "ENSG00000300022", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "8", "Annotations": "INTRACHROMOSOMAL[chr5:0.26Mb]", "Fusion": "ENSG00000299385--ENSG00000308925", "Left Breakpoint": "chr5:86553345:-", "Left Gene": "ENSG00000299385", "Right Breakpoint": "chr5:86246113:-", "Right Gene": "ENSG00000308925", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "8", "Annotations": "INTRACHROMOSOMAL[chr9:1.85Mb]", "Fusion": "ENSG00000309428--ZNG1E", "Left Breakpoint": "chr9:63817907:+", "Left Gene": "ENSG00000309428", "Right Breakpoint": "chr9:65668787:+", "Right Gene": "ZNG1E", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "8", "Annotations": "INTRACHROMOSOMAL[chr5:0.91Mb]", "Fusion": "GUSBP9--ENSG00000300022", "Left Breakpoint": "chr5:71202253:-", "Left Gene": "GUSBP9", "Right Breakpoint": "chr5:70225795:-", "Right Gene": "ENSG00000300022", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "8", "Annotations": "INTERCHROMOSOMAL[chr14--chr17]", "Fusion": "RN7SL1--SNHG29", "Left Breakpoint": "chr14:49586788:+", "Left Gene": "RN7SL1", "Right Breakpoint": "chr17:16441714:+", "Right Gene": "SNHG29", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "8", "Annotations": "INTERCHROMOSOMAL[chr14--chr17]", "Fusion": "RN7SL2--SNHG29", "Left Breakpoint": "chr14:49862641:-", "Left Gene": "RN7SL2", "Right Breakpoint": "chr17:16441714:+", "Right Gene": "SNHG29", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "7", "Annotations": "INTERCHROMOSOMAL[chr14--chr2]", "Fusion": "RN7SL2--TPRKB", "Left Breakpoint": "chr14:49862602:-", "Left Gene": "RN7SL2", "Right Breakpoint": "chr2:73732678:-", "Right Gene": "TPRKB", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "7", "Annotations": "INTRACHROMOSOMAL[chr9:23.05Mb]", "Fusion": "GLIDR--LERFS", "Left Breakpoint": "chr9:39778331:-", "Left Gene": "GLIDR", "Right Breakpoint": "chr9:62862193:-", "Right Gene": "LERFS", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "7", "Annotations": "INTERCHROMOSOMAL[chr14--chr2]", "Fusion": "RN7SL1--TPRKB", "Left Breakpoint": "chr14:49586827:+", "Left Gene": "RN7SL1", "Right Breakpoint": "chr2:73732678:-", "Right Gene": "TPRKB", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "7", "Annotations": "INTRACHROMOSOMAL[chr9:0.03Mb];LOCAL_INVERSION:+:-:[26007]", "Fusion": "CNTNAP3P1--LERFS", "Left Breakpoint": "chr9:62929128:+", "Left Gene": "CNTNAP3P1", "Right Breakpoint": "chr9:62862193:-", "Right Gene": "LERFS", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "7", "Annotations": "INTRACHROMOSOMAL[chr5:0.54Mb]", "Fusion": "ENSG00000300109--ENSG00000296329", "Left Breakpoint": "chr5:70495024:-", "Left Gene": "ENSG00000300109", "Right Breakpoint": "chr5:71226154:-", "Right Gene": "ENSG00000296329", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "7", "Annotations": "INTERCHROMOSOMAL[chr4--chr8]", "Fusion": "ATP5ME--EEF1D", "Left Breakpoint": "chr4:672504:-", "Left Gene": "ATP5ME", "Right Breakpoint": "chr8:143586852:-", "Right Gene": "EEF1D", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "7", "Annotations": "INTRACHROMOSOMAL[chr15:0.06Mb];NEIGHBORS[59693]", "Fusion": "DPH6-DT--LINC02853", "Left Breakpoint": "chr15:35711889:+", "Left Gene": "DPH6-DT", "Right Breakpoint": "chr15:35975922:+", "Right Gene": "LINC02853", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "6", "Annotations": "INTRACHROMOSOMAL[chr11:0.35Mb]", "Fusion": "ENSG00000309673--ENSG00000302828", "Left Breakpoint": "chr11:80088730:-", "Left Gene": "ENSG00000309673", "Right Breakpoint": "chr11:79721622:-", "Right Gene": "ENSG00000302828", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "6", "Annotations": "INTRACHROMOSOMAL[chr2:0.13Mb]", "Fusion": "LINC01795--LINC01122", "Left Breakpoint": "chr2:58294044:+", "Left Gene": "LINC01795", "Right Breakpoint": "chr2:58850430:+", "Right Gene": "LINC01122", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "6", "Annotations": "INTRACHROMOSOMAL[chr5:1.72Mb]", "Fusion": "TRIM36--ENSG00000303596", "Left Breakpoint": "chr5:115169608:-", "Left Gene": "TRIM36", "Right Breakpoint": "chr5:116897300:-", "Right Gene": "ENSG00000303596", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "6", "Annotations": "INTRACHROMOSOMAL[chr5:1.72Mb]", "Fusion": "TRIM36--ENSG00000303596", "Left Breakpoint": "chr5:115169691:-", "Left Gene": "TRIM36", "Right Breakpoint": "chr5:116909385:-", "Right Gene": "ENSG00000303596", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "6", "Annotations": "INTRACHROMOSOMAL[chr5:1.72Mb]", "Fusion": "TRIM36--ENSG00000303596", "Left Breakpoint": "chr5:115179975:-", "Left Gene": "TRIM36", "Right Breakpoint": "chr5:116902672:-", "Right Gene": "ENSG00000303596", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "6", "Annotations": "INTRACHROMOSOMAL[chr2:0.27Mb]", "Fusion": "VRK2--LINC01122", "Left Breakpoint": "chr2:58089723:+", "Left Gene": "VRK2", "Right Breakpoint": "chr2:58850430:+", "Right Gene": "LINC01122", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "5", "Annotations": "INTRACHROMOSOMAL[chr5:0.26Mb]", "Fusion": "ENSG00000299385--ENSG00000308925", "Left Breakpoint": "chr5:86553345:-", "Left Gene": "ENSG00000299385", "Right Breakpoint": "chr5:86213924:-", "Right Gene": "ENSG00000308925", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "5", "Annotations": "INTERCHROMOSOMAL[chr14--chr11]", "Fusion": "RN7SL1--SLC35F2", "Left Breakpoint": "chr14:49586772:+", "Left Gene": "RN7SL1", "Right Breakpoint": "chr11:107791680:-", "Right Gene": "SLC35F2", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "5", "Annotations": "INTRACHROMOSOMAL[chr3:0.32Mb]", "Fusion": "ENSG00000297708--LSAMP-AS1", "Left Breakpoint": "chr3:115810499:+", "Left Gene": "ENSG00000297708", "Right Breakpoint": "chr3:116299635:+", "Right Gene": "LSAMP-AS1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "5", "Annotations": "INTRACHROMOSOMAL[chr3:0.32Mb]", "Fusion": "ENSG00000297708--LSAMP-AS1", "Left Breakpoint": "chr3:115791158:+", "Left Gene": "ENSG00000297708", "Right Breakpoint": "chr3:116299503:+", "Right Gene": "LSAMP-AS1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "5", "Annotations": "INTRACHROMOSOMAL[chr5:0.20Mb]", "Fusion": "ENSG00000253333--ENSG00000300022", "Left Breakpoint": "chr5:70495024:-", "Left Gene": "ENSG00000253333", "Right Breakpoint": "chr5:70225795:-", "Right Gene": "ENSG00000300022", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "4", "Annotations": "INTRACHROMOSOMAL[chr1:0.00Mb];NEIGHBORS[103]", "Fusion": "ENSG00000307038--XCL1", "Left Breakpoint": "chr1:168379782:+", "Left Gene": "ENSG00000307038", "Right Breakpoint": "chr1:168580063:+", "Right Gene": "XCL1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "4", "Annotations": "INTERCHROMOSOMAL[chr14--chr17]", "Fusion": "RN7SL2--SNHG29", "Left Breakpoint": "chr14:49862602:-", "Left Gene": "RN7SL2", "Right Breakpoint": "chr17:16441619:+", "Right Gene": "SNHG29", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "4", "Annotations": "INTERCHROMOSOMAL[chr14--chr17]", "Fusion": "RN7SL2--SNHG29", "Left Breakpoint": "chr14:49862641:-", "Left Gene": "RN7SL2", "Right Breakpoint": "chr17:16441707:+", "Right Gene": "SNHG29", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "4", "Annotations": "INTERCHROMOSOMAL[chr14--chr17]", "Fusion": "RN7SL1--SNHG29", "Left Breakpoint": "chr14:49586788:+", "Left Gene": "RN7SL1", "Right Breakpoint": "chr17:16441707:+", "Right Gene": "SNHG29", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "4", "Annotations": "INTERCHROMOSOMAL[chr14--chr17]", "Fusion": "RN7SL1--SNHG29", "Left Breakpoint": "chr14:49586827:+", "Left Gene": "RN7SL1", "Right Breakpoint": "chr17:16441619:+", "Right Gene": "SNHG29", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "4", "Annotations": "INTRACHROMOSOMAL[chr4:0.14Mb]", "Fusion": "RAB28--ENSG00000301095", "Left Breakpoint": "chr4:13460699:-", "Left Gene": "RAB28", "Right Breakpoint": "chr4:13168461:-", "Right Gene": "ENSG00000301095", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "4", "Annotations": "INTERCHROMOSOMAL[chr1--chr19]", "Fusion": "IPO9--UBL5", "Left Breakpoint": "chr1:201854923:+", "Left Gene": "IPO9", "Right Breakpoint": "chr19:9828592:+", "Right Gene": "UBL5", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "4", "Annotations": "INTRACHROMOSOMAL[chr9:1.84Mb]", "Fusion": "ENSG00000309428--ENSG00000295981", "Left Breakpoint": "chr9:63817907:+", "Left Gene": "ENSG00000309428", "Right Breakpoint": "chr9:65662597:+", "Right Gene": "ENSG00000295981", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "4", "Annotations": "INTRACHROMOSOMAL[chr1:0.00Mb];NEIGHBORS[103]", "Fusion": "ENSG00000307038--XCL1", "Left Breakpoint": "chr1:168354910:+", "Left Gene": "ENSG00000307038", "Right Breakpoint": "chr1:168580063:+", "Right Gene": "XCL1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "4", "Annotations": "INTRACHROMOSOMAL[chr5:35.85Mb]", "Fusion": "ENSG00000300022--ENSG00000290548", "Left Breakpoint": "chr5:70201868:-", "Left Gene": "ENSG00000300022", "Right Breakpoint": "chr5:34182867:-", "Right Gene": "ENSG00000290548", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "4", "Annotations": "INTRACHROMOSOMAL[chr10:0.21Mb]", "Fusion": "ENSG00000301448--ENSG00000307246", "Left Breakpoint": "chr10:121313216:-", "Left Gene": "ENSG00000301448", "Right Breakpoint": "chr10:121064168:-", "Right Gene": "ENSG00000307246", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "4", "Annotations": "INTRACHROMOSOMAL[chr5:0.43Mb]", "Fusion": "ENSG00000297805--ENSG00000300022", "Left Breakpoint": "chr5:70791306:+", "Left Gene": "ENSG00000297805", "Right Breakpoint": "chr5:70225795:-", "Right Gene": "ENSG00000300022", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "4", "Annotations": "INTRACHROMOSOMAL[chr5:0.10Mb];LOCAL_INVERSION:+:-:[96646]", "Fusion": "ENSG00000295602--ENSG00000300022", "Left Breakpoint": "chr5:69916255:+", "Left Gene": "ENSG00000295602", "Right Breakpoint": "chr5:70225795:-", "Right Gene": "ENSG00000300022", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "4", "Annotations": "INTERCHROMOSOMAL[chr14--chr17]", "Fusion": "ENSG00000282885--SNHG29", "Left Breakpoint": "chr14:49862602:-", "Left Gene": "ENSG00000282885", "Right Breakpoint": "chr17:16441619:+", "Right Gene": "SNHG29", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "4", "Annotations": "INTERCHROMOSOMAL[chr14--chr17]", "Fusion": "ENSG00000282885--SNHG29", "Left Breakpoint": "chr14:49862641:-", "Left Gene": "ENSG00000282885", "Right Breakpoint": "chr17:16441707:+", "Right Gene": "SNHG29", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "4", "Annotations": "INTRACHROMOSOMAL[chr3:0.03Mb];NEIGHBORS[32604]", "Fusion": "ENSG00000242009--LINC02008", "Left Breakpoint": "chr3:81953260:+", "Left Gene": "ENSG00000242009", "Right Breakpoint": "chr3:82042725:+", "Right Gene": "LINC02008", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "4", "Annotations": "INTRACHROMOSOMAL[chr8:0.09Mb];NEIGHBORS[90947]", "Fusion": "CASC9--ENSG00000254238", "Left Breakpoint": "chr8:75278357:-", "Left Gene": "CASC9", "Right Breakpoint": "chr8:75029459:-", "Right Gene": "ENSG00000254238", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "4", "Annotations": "INTRACHROMOSOMAL[chr5:0.26Mb]", "Fusion": "ENSG00000299385--ENSG00000308925", "Left Breakpoint": "chr5:86562574:-", "Left Gene": "ENSG00000299385", "Right Breakpoint": "chr5:86246113:-", "Right Gene": "ENSG00000308925", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "INTRACHROMOSOMAL[chr4:0.36Mb]", "Fusion": "RAB28--ENSG00000302819", "Left Breakpoint": "chr4:13460699:-", "Left Gene": "RAB28", "Right Breakpoint": "chr4:12973049:-", "Right Gene": "ENSG00000302819", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "[\"PTTG1IP:Oncogene\"];INTERCHROMOSOMAL[chr4--chr21]", "Fusion": "LINC02268--PTTG1IP", "Left Breakpoint": "chr4:174064839:-", "Left Gene": "LINC02268", "Right Breakpoint": "chr21:44851627:-", "Right Gene": "PTTG1IP", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "INTERCHROMOSOMAL[chr10--chr12]", "Fusion": "MIR1915HG--HOXC5", "Left Breakpoint": "chr10:21496750:-", "Left Gene": "MIR1915HG", "Right Breakpoint": "chr12:54034278:+", "Right Gene": "HOXC5", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "INTRACHROMOSOMAL[chr7:1.59Mb]", "Fusion": "PMS2P13--BUD23", "Left Breakpoint": "chr7:75295941:-", "Left Gene": "PMS2P13", "Right Breakpoint": "chr7:73686636:+", "Right Gene": "BUD23", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "INTRACHROMOSOMAL[chr5:32.34Mb]", "Fusion": "WDR70--ENSG00000300022", "Left Breakpoint": "chr5:37381685:+", "Left Gene": "WDR70", "Right Breakpoint": "chr5:70225795:-", "Right Gene": "ENSG00000300022", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "INTRACHROMOSOMAL[chr12:0.12Mb]", "Fusion": "SLC6A15--LRRIQ1", "Left Breakpoint": "chr12:84912523:-", "Left Gene": "SLC6A15", "Right Breakpoint": "chr12:85104004:+", "Right Gene": "LRRIQ1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "INTERCHROMOSOMAL[chr3--chr8]", "Fusion": "TMA7--EEF1D", "Left Breakpoint": "chr3:48443878:+", "Left Gene": "TMA7", "Right Breakpoint": "chr8:143586852:-", "Right Gene": "EEF1D", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "[\"CDC20:Oncogene\"];INTERCHROMOSOMAL[chr20--chr1]", "Fusion": "UBE2V1--CDC20", "Left Breakpoint": "chr20:50082505:-", "Left Gene": "UBE2V1", "Right Breakpoint": "chr1:43359969:+", "Right Gene": "CDC20", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "[\"PRDX1:Oncogene\"];INTERCHROMOSOMAL[chr12--chr1]", "Fusion": "GPN3--PRDX1", "Left Breakpoint": "chr12:110459695:-", "Left Gene": "GPN3", "Right Breakpoint": "chr1:45519054:-", "Right Gene": "PRDX1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "INTRACHROMOSOMAL[chr21:0.53Mb]", "Fusion": "LINC01695--ENSG00000300761", "Left Breakpoint": "chr21:28163602:-", "Left Gene": "LINC01695", "Right Breakpoint": "chr21:27586087:-", "Right Gene": "ENSG00000300761", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "INTRACHROMOSOMAL[chr12:0.15Mb]", "Fusion": "RERG--ARHGDIB", "Left Breakpoint": "chr12:15217429:-", "Left Gene": "RERG", "Right Breakpoint": "chr12:14949885:-", "Right Gene": "ARHGDIB", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "INTRACHROMOSOMAL[chr9:23.05Mb]", "Fusion": "GLIDR--LERFS", "Left Breakpoint": "chr9:39778331:-", "Left Gene": "GLIDR", "Right Breakpoint": "chr9:62867110:-", "Right Gene": "LERFS", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "INTRACHROMOSOMAL[chr2:0.17Mb]", "Fusion": "ENSG00000293612--ENSG00000285755", "Left Breakpoint": "chr2:57916281:-", "Left Gene": "ENSG00000293612", "Right Breakpoint": "chr2:57669421:-", "Right Gene": "ENSG00000285755", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "INTRACHROMOSOMAL[chr9:4.40Mb]", "Fusion": "ENSG00000309428--ENSG00000226904", "Left Breakpoint": "chr9:63817907:+", "Left Gene": "ENSG00000309428", "Right Breakpoint": "chr9:68228653:+", "Right Gene": "ENSG00000226904", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "[\"DEEPEST2019\",\"TumorFusionsNAR2018\",\"TCGA_StarF2019\",\"CCLE_StarF2019\"];INTRACHROMOSOMAL[chr7:0.05Mb];LOCAL_REARRANGEMENT:-:[49197]", "Fusion": "AGMO--MEOX2", "Left Breakpoint": "chr7:15544772:-", "Left Gene": "AGMO", "Right Breakpoint": "chr7:15626918:-", "Right Gene": "MEOX2", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "INTRACHROMOSOMAL[chr9:0.03Mb];LOCAL_INVERSION:+:-:[26007]", "Fusion": "CNTNAP3P1--LERFS", "Left Breakpoint": "chr9:62929128:+", "Left Gene": "CNTNAP3P1", "Right Breakpoint": "chr9:62867110:-", "Right Gene": "LERFS", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "INTERCHROMOSOMAL[chr14--chr17]", "Fusion": "ENSG00000282885--SNHG29", "Left Breakpoint": "chr14:49862619:-", "Left Gene": "ENSG00000282885", "Right Breakpoint": "chr17:16441714:+", "Right Gene": "SNHG29", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "[\"CASC3:Oncogene\"];INTERCHROMOSOMAL[chr17--chr1]", "Fusion": "CASC3--RPS27", "Left Breakpoint": "chr17:40141607:+", "Left Gene": "CASC3", "Right Breakpoint": "chr1:153990747:+", "Right Gene": "RPS27", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "INTRACHROMOSOMAL[chr5:0.26Mb]", "Fusion": "ENSG00000299385--ENSG00000308925", "Left Breakpoint": "chr5:86562600:-", "Left Gene": "ENSG00000299385", "Right Breakpoint": "chr5:86217150:-", "Right Gene": "ENSG00000308925", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "INTRACHROMOSOMAL[chr5:0.19Mb]", "Fusion": "ENSG00000304371--ENSG00000293866", "Left Breakpoint": "chr5:107296335:-", "Left Gene": "ENSG00000304371", "Right Breakpoint": "chr5:107084708:-", "Right Gene": "ENSG00000293866", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "INTRACHROMOSOMAL[chr5:0.27Mb]", "Fusion": "ENSG00000304371--LINC01950", "Left Breakpoint": "chr5:107285866:-", "Left Gene": "ENSG00000304371", "Right Breakpoint": "chr5:106815557:-", "Right Gene": "LINC01950", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "3", "Annotations": "INTRACHROMOSOMAL[chr20:0.09Mb];NEIGHBORS[90878]", "Fusion": "ENSG00000307125--CASC20", "Left Breakpoint": "chr20:6355638:+", "Left Gene": "ENSG00000307125", "Right Breakpoint": "chr20:6568630:+", "Right Gene": "CASC20", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"ENO1:Oncogene\"];INTRACHROMOSOMAL[chr1:142.32Mb]", "Fusion": "PIP5K1A--ENO1", "Left Breakpoint": "chr1:151198706:+", "Left Gene": "PIP5K1A", "Right Breakpoint": "chr1:8870489:-", "Right Gene": "ENO1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"RBBP5:Oncogene\"];INTERCHROMOSOMAL[chr1--chr18]", "Fusion": "RBBP5--DSC1", "Left Breakpoint": "chr1:205121855:-", "Left Gene": "RBBP5", "Right Breakpoint": "chr18:31143791:-", "Right Gene": "DSC1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr19--chr16]", "Fusion": "PNKP--TCF25", "Left Breakpoint": "chr19:49866399:-", "Left Gene": "PNKP", "Right Breakpoint": "chr16:89895038:+", "Right Gene": "TCF25", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr6--chr19]", "Fusion": "PPP1R11--FSD1", "Left Breakpoint": "chr6:30067479:+", "Left Gene": "PPP1R11", "Right Breakpoint": "chr19:4322986:+", "Right Gene": "FSD1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr21--chr11]", "Fusion": "PRMT2--NAP1L4", "Left Breakpoint": "chr21:46649739:+", "Left Gene": "PRMT2", "Right Breakpoint": "chr11:2959909:-", "Right Gene": "NAP1L4", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"RACK1:Oncogene\"];INTERCHROMOSOMAL[chr14--chr5]", "Fusion": "PSMC6--RACK1", "Left Breakpoint": "chr14:52724036:+", "Left Gene": "PSMC6", "Right Breakpoint": "chr5:181241639:-", "Right Gene": "RACK1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr20--chr18]", "Fusion": "PTPRA--IER3IP1", "Left Breakpoint": "chr20:3007420:+", "Left Gene": "PTPRA", "Right Breakpoint": "chr18:47157537:-", "Right Gene": "IER3IP1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"RHOA:Oncogene\"];INTRACHROMOSOMAL[chr3:0.26Mb]", "Fusion": "QRICH1--RHOA", "Left Breakpoint": "chr3:49093912:-", "Left Gene": "QRICH1", "Right Breakpoint": "chr3:49375591:-", "Right Gene": "RHOA", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr4:0.36Mb]", "Fusion": "RAB28--ENSG00000302819", "Left Breakpoint": "chr4:13376476:-", "Left Gene": "RAB28", "Right Breakpoint": "chr4:12973049:-", "Right Gene": "ENSG00000302819", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr2--chr17]", "Fusion": "RAB3GAP1--C17orf75", "Left Breakpoint": "chr2:135163101:+", "Left Gene": "RAB3GAP1", "Right Breakpoint": "chr17:32342121:-", "Right Gene": "C17orf75", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr16--chr12]", "Fusion": "RPL13--HNRNPA1", "Left Breakpoint": "chr16:89563073:+", "Left Gene": "RPL13", "Right Breakpoint": "chr12:54283896:+", "Right Gene": "HNRNPA1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr12--chrX]", "Fusion": "RBMS2--IRAK1", "Left Breakpoint": "chr12:56587597:+", "Left Gene": "RBMS2", "Right Breakpoint": "chrX:154011130:-", "Right Gene": "IRAK1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr1--chr6]", "Fusion": "RCC1--DDX39B", "Left Breakpoint": "chr1:28508905:+", "Left Gene": "RCC1", "Right Breakpoint": "chr6:31532911:-", "Right Gene": "DDX39B", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr12:0.15Mb]", "Fusion": "RERG--ARHGDIB", "Left Breakpoint": "chr12:15217429:-", "Left Gene": "RERG", "Right Breakpoint": "chr12:14944839:-", "Right Gene": "ARHGDIB", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr17--chr21]", "Fusion": "RNU2-1--ENSG00000280441", "Left Breakpoint": "chr17:43233751:-", "Left Gene": "RNU2-1", "Right Breakpoint": "chr21:8450147:+", "Right Gene": "ENSG00000280441", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr19--chr2]", "Fusion": "PGLS-DT--NBAS", "Left Breakpoint": "chr19:17511343:-", "Left Gene": "PGLS-DT", "Right Breakpoint": "chr2:15218968:-", "Right Gene": "NBAS", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr22--chr6]", "Fusion": "RPL3--GTF2H5", "Left Breakpoint": "chr22:39314700:-", "Left Gene": "RPL3", "Right Breakpoint": "chr6:158192111:+", "Right Gene": "GTF2H5", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"HSPD1:Oncogene\"];INTERCHROMOSOMAL[chr13--chr2]", "Fusion": "SACS--HSPD1", "Left Breakpoint": "chr13:23375144:-", "Left Gene": "SACS", "Right Breakpoint": "chr2:197487983:-", "Right Gene": "HSPD1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr5--chr1]", "Fusion": "SAR1B--TDRD5", "Left Breakpoint": "chr5:134623962:-", "Left Gene": "SAR1B", "Right Breakpoint": "chr1:179652039:+", "Right Gene": "TDRD5", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr4:0.01Mb];LOCAL_INVERSION:+:-:[6771]", "Fusion": "SEPTIN11--CCNI", "Left Breakpoint": "chr4:76949930:+", "Left Gene": "SEPTIN11", "Right Breakpoint": "chr4:77058635:-", "Right Gene": "CCNI", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"GRB2:Oncogene\"];INTERCHROMOSOMAL[chr5--chr17]", "Fusion": "PHAX--GRB2", "Left Breakpoint": "chr5:126624643:+", "Left Gene": "PHAX", "Right Breakpoint": "chr17:75332773:-", "Right Gene": "GRB2", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"PAX6:Oncogene\"];INTERCHROMOSOMAL[chr11--chr2]", "Fusion": "PAX6--YWHAQ", "Left Breakpoint": "chr11:31810828:-", "Left Gene": "PAX6", "Right Breakpoint": "chr2:9588328:-", "Right Gene": "YWHAQ", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr19--chr4]", "Fusion": "PEPD--OCIAD1", "Left Breakpoint": "chr19:33411641:-", "Left Gene": "PEPD", "Right Breakpoint": "chr4:48832620:+", "Right Gene": "OCIAD1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr7:0.38Mb]", "Fusion": "PDIA4--ENSG00000287636", "Left Breakpoint": "chr7:149008159:-", "Left Gene": "PDIA4", "Right Breakpoint": "chr7:148474774:-", "Right Gene": "ENSG00000287636", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr7--chr19]", "Fusion": "MDH2--PGLS", "Left Breakpoint": "chr7:76064370:+", "Left Gene": "MDH2", "Right Breakpoint": "chr19:17517722:+", "Right Gene": "PGLS", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"MECOM:Oncogene\"];[\"NCK1:Oncogene\"];INTRACHROMOSOMAL[chr3:32.13Mb]", "Fusion": "MECOM--NCK1", "Left Breakpoint": "chr3:169663336:-", "Left Gene": "MECOM", "Right Breakpoint": "chr3:136927984:+", "Right Gene": "NCK1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr14--chr3]", "Fusion": "MIA2--GAP43", "Left Breakpoint": "chr14:39279537:+", "Left Gene": "MIA2", "Right Breakpoint": "chr3:115720794:+", "Right Gene": "GAP43", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"DEEPEST2019\",\"TumorFusionsNAR2018\",\"TCGA_StarF2019\"];INTRACHROMOSOMAL[chr18:0.07Mb];LOCAL_REARRANGEMENT:+:[71433]", "Fusion": "MIB1--SNRPD1", "Left Breakpoint": "chr18:21804014:+", "Left Gene": "MIB1", "Right Breakpoint": "chr18:21629062:+", "Right Gene": "SNRPD1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr15--chr1]", "Fusion": "MORF4L1--MORF4L1P1", "Left Breakpoint": "chr15:78897061:+", "Left Gene": "MORF4L1", "Right Breakpoint": "chr1:220253548:+", "Right Gene": "MORF4L1P1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr6--chr17]", "Fusion": "MRPS10--DDX52", "Left Breakpoint": "chr6:42208065:-", "Left Gene": "MRPS10", "Right Breakpoint": "chr17:37610157:-", "Right Gene": "DDX52", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr10--chr8]", "Fusion": "MRPS16--IQANK1", "Left Breakpoint": "chr10:73249962:-", "Left Gene": "MRPS16", "Right Breakpoint": "chr8:143745684:+", "Right Gene": "IQANK1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"MSI2:Oncogene\"];INTERCHROMOSOMAL[chr17--chr20]", "Fusion": "MSI2--YWHAB", "Left Breakpoint": "chr17:57627303:+", "Left Gene": "MSI2", "Right Breakpoint": "chr20:44885768:+", "Right Gene": "YWHAB", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr11:34.14Mb]", "Fusion": "MTMR2--APLP2", "Left Breakpoint": "chr11:95888156:-", "Left Gene": "MTMR2", "Right Breakpoint": "chr11:130120706:+", "Right Gene": "APLP2", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"MYH9:Oncogene\"];INTERCHROMOSOMAL[chr22--chr6]", "Fusion": "MYH9--TUBB", "Left Breakpoint": "chr22:36293435:-", "Left Gene": "MYH9", "Right Breakpoint": "chr6:30724326:+", "Right Gene": "TUBB", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr2--chr1]", "Fusion": "MYO1B--NDUFS5", "Left Breakpoint": "chr2:191387450:+", "Left Gene": "MYO1B", "Right Breakpoint": "chr1:39034392:+", "Right Gene": "NDUFS5", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr13--chr17]", "Fusion": "N4BP2L2--SNHG16", "Left Breakpoint": "chr13:32535680:-", "Left Gene": "N4BP2L2", "Right Breakpoint": "chr17:76564377:+", "Right Gene": "SNHG16", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr8--chr15]", "Fusion": "NDUFAF6--RPL4", "Left Breakpoint": "chr8:94958179:+", "Left Gene": "NDUFAF6", "Right Breakpoint": "chr15:66500176:-", "Right Gene": "RPL4", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"TACC3:Oncogene\"];INTERCHROMOSOMAL[chr1--chr4]", "Fusion": "NFYC--TACC3", "Left Breakpoint": "chr1:40758294:+", "Left Gene": "NFYC", "Right Breakpoint": "chr4:1744518:+", "Right Gene": "TACC3", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr2:4.46Mb]", "Fusion": "NOP58--FASTKD2", "Left Breakpoint": "chr2:202265986:+", "Left Gene": "NOP58", "Right Breakpoint": "chr2:206774225:+", "Right Gene": "FASTKD2", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"NSD2:Oncogene\"];INTERCHROMOSOMAL[chr4--chr19]", "Fusion": "NSD2--ZFP28", "Left Breakpoint": "chr4:1935262:+", "Left Gene": "NSD2", "Right Breakpoint": "chr19:56553684:+", "Right Gene": "ZFP28", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr17--chr1]", "Fusion": "NSRP1--NSRP1P1", "Left Breakpoint": "chr17:30184892:+", "Left Gene": "NSRP1", "Right Breakpoint": "chr1:77847125:+", "Right Gene": "NSRP1P1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr12:13.47Mb]", "Fusion": "PA2G4--CCT2", "Left Breakpoint": "chr12:56107613:+", "Left Gene": "PA2G4", "Right Breakpoint": "chr12:69589485:+", "Right Gene": "CCT2", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr12--chr5]", "Fusion": "SINHCAF--ZNF354B", "Left Breakpoint": "chr12:31282595:-", "Left Gene": "SINHCAF", "Right Breakpoint": "chr5:178887856:+", "Right Gene": "ZNF354B", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr7--chr3]", "Fusion": "PAXIP1--RPL14", "Left Breakpoint": "chr7:154969002:-", "Left Gene": "PAXIP1", "Right Breakpoint": "chr3:40462050:+", "Right Gene": "RPL14", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr10--chr14]", "Fusion": "PCDH15--LINC02301", "Left Breakpoint": "chr10:53840320:-", "Left Gene": "PCDH15", "Right Breakpoint": "chr14:82642506:+", "Right Gene": "LINC02301", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"UQCRC2:Oncogene\"];INTERCHROMOSOMAL[chr15--chr16]", "Fusion": "SIN3A--UQCRC2", "Left Breakpoint": "chr15:75430187:-", "Left Gene": "SIN3A", "Right Breakpoint": "chr16:21980547:+", "Right Gene": "UQCRC2", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr10--chr2]", "Fusion": "SLC25A16--PCBP1-AS1", "Left Breakpoint": "chr10:68487144:-", "Left Gene": "SLC25A16", "Right Breakpoint": "chr2:70032255:-", "Right Gene": "PCBP1-AS1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"CCNB1:Oncogene\"];INTERCHROMOSOMAL[chr19--chr5]", "Fusion": "SIRT6--CCNB1", "Left Breakpoint": "chr19:4180782:-", "Left Gene": "SIRT6", "Right Breakpoint": "chr5:69171270:+", "Right Gene": "CCNB1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr2--chr7]", "Fusion": "VRK2--USP42", "Left Breakpoint": "chr2:58089723:+", "Left Gene": "VRK2", "Right Breakpoint": "chr7:6159450:+", "Right Gene": "USP42", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chrY--chr11]", "Fusion": "TXLNGY--RPL27A", "Left Breakpoint": "chrY:19587351:+", "Left Gene": "TXLNGY", "Right Breakpoint": "chr11:8683188:+", "Right Gene": "RPL27A", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr17--chr12]", "Fusion": "TXNDC17--TMPO-AS1", "Left Breakpoint": "chr17:6641204:+", "Left Gene": "TXNDC17", "Right Breakpoint": "chr12:98515923:-", "Right Gene": "TMPO-AS1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr17--chr2]", "Fusion": "UBB--TRIP12", "Left Breakpoint": "chr17:16382147:+", "Left Gene": "UBB", "Right Breakpoint": "chr2:229777497:-", "Right Gene": "TRIP12", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"UQCRC2:Oncogene\"];INTERCHROMOSOMAL[chr16--chr19]", "Fusion": "UQCRC2--PWWP3A", "Left Breakpoint": "chr16:21976243:+", "Left Gene": "UQCRC2", "Right Breakpoint": "chr19:1376519:+", "Right Gene": "PWWP3A", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr5--chr3]", "Fusion": "UTP15--RPL15", "Left Breakpoint": "chr5:73568482:+", "Left Gene": "UTP15", "Right Breakpoint": "chr3:23919356:+", "Right Gene": "RPL15", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr2:0.37Mb]", "Fusion": "VRK2--ENSG00000305544", "Left Breakpoint": "chr2:58123233:+", "Left Gene": "VRK2", "Right Breakpoint": "chr2:57506363:+", "Right Gene": "ENSG00000305544", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr2:0.27Mb]", "Fusion": "VRK2--LINC01122", "Left Breakpoint": "chr2:58048967:+", "Left Gene": "VRK2", "Right Breakpoint": "chr2:58656650:+", "Right Gene": "LINC01122", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr2:0.27Mb]", "Fusion": "VRK2--LINC01122", "Left Breakpoint": "chr2:58139832:+", "Left Gene": "VRK2", "Right Breakpoint": "chr2:58656650:+", "Right Gene": "LINC01122", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr2:0.27Mb]", "Fusion": "VRK2--LINC01122", "Left Breakpoint": "chr2:58048967:+", "Left Gene": "VRK2", "Right Breakpoint": "chr2:58850430:+", "Right Gene": "LINC01122", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr12--chr11]", "Fusion": "WBP11--TRMT112", "Left Breakpoint": "chr12:14790621:-", "Left Gene": "WBP11", "Right Breakpoint": "chr11:64316968:-", "Right Gene": "TRMT112", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr4--chr16]", "Fusion": "SLAIN2--GABARAPL2", "Left Breakpoint": "chr4:48341685:+", "Left Gene": "SLAIN2", "Right Breakpoint": "chr16:75566387:+", "Right Gene": "GABARAPL2", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"CCNB1IP1:Oncogene\"];INTERCHROMOSOMAL[chr3--chr14]", "Fusion": "WDR48--CCNB1IP1", "Left Breakpoint": "chr3:39077213:+", "Left Gene": "WDR48", "Right Breakpoint": "chr14:20313801:-", "Right Gene": "CCNB1IP1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"XPO1:ArcherDX_panel\",\"XPO1:FoundationOne_panel\"];INTERCHROMOSOMAL[chr2--chr3]", "Fusion": "XPO1--TOPBP1", "Left Breakpoint": "chr2:61533772:-", "Left Gene": "XPO1", "Right Breakpoint": "chr3:133608962:-", "Right Gene": "TOPBP1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr13--chr1]", "Fusion": "XPO4--SF3A3", "Left Breakpoint": "chr13:20855627:-", "Left Gene": "XPO4", "Right Breakpoint": "chr1:37969440:-", "Right Gene": "SF3A3", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"YBX1:Oncogene\"];INTERCHROMOSOMAL[chr1--chr16]", "Fusion": "YBX1--GLYR1", "Left Breakpoint": "chr1:42702350:+", "Left Gene": "YBX1", "Right Breakpoint": "chr16:4821386:-", "Right Gene": "GLYR1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr17--chr4]", "Fusion": "YPEL2--DCTD", "Left Breakpoint": "chr17:59331824:+", "Left Gene": "YPEL2", "Right Breakpoint": "chr4:182915575:-", "Right Gene": "DCTD", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr7:0.25Mb]", "Fusion": "YWHAG--POMZP3", "Left Breakpoint": "chr7:76358722:-", "Left Gene": "YWHAG", "Right Breakpoint": "chr7:76618615:-", "Right Gene": "POMZP3", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"RACK1:Oncogene\"];INTERCHROMOSOMAL[chr1--chr5]", "Fusion": "ZBTB8OS--RACK1", "Left Breakpoint": "chr1:32634768:-", "Left Gene": "ZBTB8OS", "Right Breakpoint": "chr5:181241639:-", "Right Gene": "RACK1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr3:5.30Mb]", "Fusion": "ZNF501--RPSA", "Left Breakpoint": "chr3:44731560:+", "Left Gene": "ZNF501", "Right Breakpoint": "chr3:39407621:+", "Right Gene": "RPSA", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr6--chr8]", "Fusion": "LINC00680--PLPBP", "Left Breakpoint": "chr6:57959028:-", "Left Gene": "LINC00680", "Right Breakpoint": "chr8:37772755:+", "Right Gene": "PLPBP", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"TRIO:Oncogene\"];INTERCHROMOSOMAL[chr5--chr11]", "Fusion": "TRIO--ZNF143", "Left Breakpoint": "chr5:14482629:+", "Left Gene": "TRIO", "Right Breakpoint": "chr11:9497700:+", "Right Gene": "ZNF143", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr11--chr3]", "Fusion": "TRIM44--DNAJC13", "Left Breakpoint": "chr11:35663780:+", "Left Gene": "TRIM44", "Right Breakpoint": "chr3:132507237:+", "Right Gene": "DNAJC13", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr5:1.72Mb]", "Fusion": "TRIM36--ENSG00000303596", "Left Breakpoint": "chr5:115169654:-", "Left Gene": "TRIM36", "Right Breakpoint": "chr5:116909385:-", "Right Gene": "ENSG00000303596", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr5:1.72Mb]", "Fusion": "TRIM36--ENSG00000303596", "Left Breakpoint": "chr5:115169604:-", "Left Gene": "TRIM36", "Right Breakpoint": "chr5:116909488:-", "Right Gene": "ENSG00000303596", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr4:0.05Mb];LOCAL_INVERSION:-:+:[49539]", "Fusion": "SLC10A7--LSM6", "Left Breakpoint": "chr4:146503849:-", "Left Gene": "SLC10A7", "Right Breakpoint": "chr4:146190081:+", "Right Gene": "LSM6", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr17--chr4]", "Fusion": "SLC25A39--ALB", "Left Breakpoint": "chr17:44321074:-", "Left Gene": "SLC25A39", "Right Breakpoint": "chr4:73415035:+", "Right Gene": "ALB", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr17--chr8]", "Fusion": "SMYD4--CSPP1", "Left Breakpoint": "chr17:1784326:-", "Left Gene": "SMYD4", "Right Breakpoint": "chr8:67131951:+", "Right Gene": "CSPP1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"CRTC3:Oncogene\"];INTERCHROMOSOMAL[chr17--chr15]", "Fusion": "SNHG16--CRTC3", "Left Breakpoint": "chr17:76652978:+", "Left Gene": "SNHG16", "Right Breakpoint": "chr15:90613169:+", "Right Gene": "CRTC3", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr15--chr7]", "Fusion": "SORD--PSMC2", "Left Breakpoint": "chr15:45073594:+", "Left Gene": "SORD", "Right Breakpoint": "chr7:103366091:+", "Right Gene": "PSMC2", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"DEEPEST2019\",\"TumorFusionsNAR2018\",\"ChimerSeq\",\"TCGA_StarF2019\"];INTRACHROMOSOMAL[chr2:0.11Mb]", "Fusion": "SP3--OLA1", "Left Breakpoint": "chr2:173954873:-", "Left Gene": "SP3", "Right Breakpoint": "chr2:174142000:-", "Right Gene": "OLA1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr5:0.16Mb]", "Fusion": "SPRY4--NDFIP1", "Left Breakpoint": "chr5:142324844:-", "Left Gene": "SPRY4", "Right Breakpoint": "chr5:142131808:+", "Right Gene": "NDFIP1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"SYNE2:Oncogene\"];INTERCHROMOSOMAL[chr14--chr9]", "Fusion": "SYNE2--VCP", "Left Breakpoint": "chr14:63963965:+", "Left Gene": "SYNE2", "Right Breakpoint": "chr9:35057140:-", "Right Gene": "VCP", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"NEIL1:Oncogene\"];INTERCHROMOSOMAL[chr11--chr15]", "Fusion": "TAF1D--NEIL1", "Left Breakpoint": "chr11:93737064:-", "Left Gene": "TAF1D", "Right Breakpoint": "chr15:75354964:+", "Right Gene": "NEIL1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"PRR4:Oncogene\"];INTRACHROMOSOMAL[chr12:0.09Mb];NEIGHBORS[87933]", "Fusion": "TAS2R14--PRR4", "Left Breakpoint": "chr12:11171422:-", "Left Gene": "TAS2R14", "Right Breakpoint": "chr12:10848407:-", "Right Gene": "PRR4", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr2:30.76Mb]", "Fusion": "TBC1D8--C2orf42", "Left Breakpoint": "chr2:101151127:-", "Left Gene": "TBC1D8", "Right Breakpoint": "chr2:70182935:-", "Right Gene": "C2orf42", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr1--chr7]", "Fusion": "THAP3--GSTK1", "Left Breakpoint": "chr1:6632495:+", "Left Gene": "THAP3", "Right Breakpoint": "chr7:143264086:+", "Right Gene": "GSTK1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr17--chr5]", "Fusion": "TIMM22--PPP2CA", "Left Breakpoint": "chr17:998975:+", "Left Gene": "TIMM22", "Right Breakpoint": "chr5:134206131:-", "Right Gene": "PPP2CA", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr14--chr8]", "Fusion": "TINF2--STAU2", "Left Breakpoint": "chr14:24240064:-", "Left Gene": "TINF2", "Right Breakpoint": "chr8:73422702:-", "Right Gene": "STAU2", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr6--chr1]", "Fusion": "TMEM242--VAMP3", "Left Breakpoint": "chr6:157318782:-", "Left Gene": "TMEM242", "Right Breakpoint": "chr1:7777160:+", "Right Gene": "VAMP3", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr17--chr1]", "Fusion": "TOM1L1--UBAP2L", "Left Breakpoint": "chr17:54912815:+", "Left Gene": "TOM1L1", "Right Breakpoint": "chr1:154258977:+", "Right Gene": "UBAP2L", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"SPTAN1:Oncogene\"];INTERCHROMOSOMAL[chr20--chr9]", "Fusion": "TPD52L2--SPTAN1", "Left Breakpoint": "chr20:63889238:+", "Left Gene": "TPD52L2", "Right Breakpoint": "chr9:128611714:+", "Right Gene": "SPTAN1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr5:1.72Mb]", "Fusion": "TRIM36--ENSG00000303596", "Left Breakpoint": "chr5:115147114:-", "Left Gene": "TRIM36", "Right Breakpoint": "chr5:116897300:-", "Right Gene": "ENSG00000303596", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr5:1.72Mb]", "Fusion": "TRIM36--ENSG00000303596", "Left Breakpoint": "chr5:115169684:-", "Left Gene": "TRIM36", "Right Breakpoint": "chr5:116909385:-", "Right Gene": "ENSG00000303596", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr21--chr2]", "Fusion": "LINC03105--HAT1", "Left Breakpoint": "chr21:7430838:+", "Left Gene": "LINC03105", "Right Breakpoint": "chr2:171925537:+", "Right Gene": "HAT1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr9:25.46Mb]", "Fusion": "ENSG00000278068--BMS1P14", "Left Breakpoint": "chr9:66029908:+", "Left Gene": "ENSG00000278068", "Right Breakpoint": "chr9:40352882:-", "Right Gene": "BMS1P14", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"RFC1:Oncogene\"];INTRACHROMOSOMAL[chr4:21.27Mb]", "Fusion": "LCORL--RFC1", "Left Breakpoint": "chr4:17961903:-", "Left Gene": "LCORL", "Right Breakpoint": "chr4:39327756:-", "Right Gene": "RFC1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"DKC1:Oncogene\"];INTRACHROMOSOMAL[chrX:107.55Mb]", "Fusion": "DKC1--UBA1", "Left Breakpoint": "chrX:154762981:+", "Left Gene": "DKC1", "Right Breakpoint": "chrX:47209623:+", "Right Gene": "UBA1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr2:36.32Mb]", "Fusion": "CALM2--PDIA6", "Left Breakpoint": "chr2:47161781:-", "Left Gene": "CALM2", "Right Breakpoint": "chr2:10784326:-", "Right Gene": "PDIA6", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr7--chr14]", "Fusion": "CAPZA2--HNRNPC", "Left Breakpoint": "chr7:116904339:+", "Left Gene": "CAPZA2", "Right Breakpoint": "chr14:21211923:-", "Right Gene": "HNRNPC", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"CBL:FoundationOne_panel\",\"CBL:ArcherDX_panel\",\"CBL:Oncogene\"];[\"HNRNPA3:Oncogene\"];INTERCHROMOSOMAL[chr11--chr2]", "Fusion": "CBL--HNRNPA3", "Left Breakpoint": "chr11:119299587:+", "Left Gene": "CBL", "Right Breakpoint": "chr2:177216893:+", "Right Gene": "HNRNPA3", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr19--chrX]", "Fusion": "CHERP--SH3KBP1", "Left Breakpoint": "chr19:16529648:-", "Left Gene": "CHERP", "Right Breakpoint": "chrX:19535876:-", "Right Gene": "SH3KBP1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr2:0.02Mb];LOCAL_INVERSION:-:+:[24636]", "Fusion": "CLK1--NIF3L1", "Left Breakpoint": "chr2:200861238:-", "Left Gene": "CLK1", "Right Breakpoint": "chr2:200897076:+", "Right Gene": "NIF3L1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr16--chr4]", "Fusion": "CNOT1--SEC31A", "Left Breakpoint": "chr16:58585338:-", "Left Gene": "CNOT1", "Right Breakpoint": "chr4:82870424:-", "Right Gene": "SEC31A", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr12--chr14]", "Fusion": "CSAD--PSMC6", "Left Breakpoint": "chr12:53170072:-", "Left Gene": "CSAD", "Right Breakpoint": "chr14:52711101:+", "Right Gene": "PSMC6", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr14:0.01Mb];LOCAL_INVERSION:-:+:[12751]", "Fusion": "DAD1--TRAC", "Left Breakpoint": "chr14:22575059:-", "Left Gene": "DAD1", "Right Breakpoint": "chr14:22547506:+", "Right Gene": "TRAC", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr4--chr17]", "Fusion": "DANCR--H3-3B", "Left Breakpoint": "chr4:52713516:+", "Left Gene": "DANCR", "Right Breakpoint": "chr17:75779114:-", "Right Gene": "H3-3B", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"DNMT1:Oncogene\"];[\"SMARCA4:Oncogene\",\"SMARCA4:FoundationOne_panel\",\"SMARCA4:ArcherDX_panel\"];INTRACHROMOSOMAL[chr19:0.73Mb]", "Fusion": "DNMT1--SMARCA4", "Left Breakpoint": "chr19:10180832:-", "Left Gene": "DNMT1", "Right Breakpoint": "chr19:11039262:+", "Right Gene": "SMARCA4", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr19:17.99Mb]", "Fusion": "BSG--UBA52", "Left Breakpoint": "chr19:583418:+", "Left Gene": "BSG", "Right Breakpoint": "chr19:18575085:+", "Right Gene": "UBA52", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr15:0.10Mb];NEIGHBORS[95261]", "Fusion": "DPH6--PRELID1P4", "Left Breakpoint": "chr15:35373521:-", "Left Gene": "DPH6", "Right Breakpoint": "chr15:35122280:-", "Right Gene": "PRELID1P4", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr2:0.00Mb];LOCAL_INVERSION:-:+:[1890]", "Fusion": "DTYMK--ATG4B", "Left Breakpoint": "chr2:241686654:-", "Left Gene": "DTYMK", "Right Breakpoint": "chr2:241666645:+", "Right Gene": "ATG4B", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr19--chr13]", "Fusion": "ECH1--RCBTB2", "Left Breakpoint": "chr19:38815857:-", "Left Gene": "ECH1", "Right Breakpoint": "chr13:48489284:-", "Right Gene": "RCBTB2", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"EIF2AK1:Oncogene\"];INTERCHROMOSOMAL[chr7--chr10]", "Fusion": "EIF2AK1--KIF11", "Left Breakpoint": "chr7:6049958:-", "Left Gene": "EIF2AK1", "Right Breakpoint": "chr10:92654159:+", "Right Gene": "KIF11", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"EIF4E:Oncogene\"];[\"PRKAR1A:Oncogene\",\"PRKAR1A:FoundationOne_panel\",\"PRKAR1A:ArcherDX_panel\"];INTERCHROMOSOMAL[chr4--chr17]", "Fusion": "EIF4E--PRKAR1A", "Left Breakpoint": "chr4:98891254:-", "Left Gene": "EIF4E", "Right Breakpoint": "chr17:68531081:+", "Right Gene": "PRKAR1A", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"EIF4G1:Oncogene\"];[\"SMARCA4:Oncogene\",\"SMARCA4:FoundationOne_panel\",\"SMARCA4:ArcherDX_panel\"];INTERCHROMOSOMAL[chr3--chr19]", "Fusion": "EIF4G1--SMARCA4", "Left Breakpoint": "chr3:184321341:+", "Left Gene": "EIF4G1", "Right Breakpoint": "chr19:11041307:+", "Right Gene": "SMARCA4", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"UBE2D2:Oncogene\"];INTRACHROMOSOMAL[chr5:40.03Mb]", "Fusion": "ENSG00000250999--UBE2D2", "Left Breakpoint": "chr5:179658481:+", "Left Gene": "ENSG00000250999", "Right Breakpoint": "chr5:139600372:+", "Right Gene": "UBE2D2", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr21--chr2]", "Fusion": "ENSG00000277067--HAT1", "Left Breakpoint": "chr21:7049060:+", "Left Gene": "ENSG00000277067", "Right Breakpoint": "chr2:171925537:+", "Right Gene": "HAT1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"MAP2K4:Oncogene\",\"MAP2K4:ArcherDX_panel\",\"MAP2K4:FoundationOne_panel\"];INTERCHROMOSOMAL[chr21--chr17]", "Fusion": "ENSG00000278903--MAP2K4", "Left Breakpoint": "chr21:6322697:+", "Left Gene": "ENSG00000278903", "Right Breakpoint": "chr17:12081356:+", "Right Gene": "MAP2K4", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr19--chrX]", "Fusion": "C19orf48P--SCML2", "Left Breakpoint": "chr19:50803549:-", "Left Gene": "C19orf48P", "Right Breakpoint": "chrX:18239746:-", "Right Gene": "SCML2", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"MBD2:Oncogene\"];INTERCHROMOSOMAL[chr5--chr18]", "Fusion": "BRIX1--MBD2", "Left Breakpoint": "chr5:34915897:+", "Left Gene": "BRIX1", "Right Breakpoint": "chr18:54189011:-", "Right Gene": "MBD2", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr17--chr12]", "Fusion": "KRT10--PTGES3", "Left Breakpoint": "chr17:40822303:-", "Left Gene": "KRT10", "Right Breakpoint": "chr12:56688026:-", "Right Gene": "PTGES3", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr9:1.68Mb]", "Fusion": "ANKRD20A1--ANKRD20A3P", "Left Breakpoint": "chr9:67910121:+", "Left Gene": "ANKRD20A1", "Right Breakpoint": "chr9:66118819:-", "Right Gene": "ANKRD20A3P", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr3:0.41Mb]", "Fusion": "ACAD9--ENSG00000290993", "Left Breakpoint": "chr3:128904852:+", "Left Gene": "ACAD9", "Right Breakpoint": "chr3:129399083:-", "Right Gene": "ENSG00000290993", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr17--chr13]", "Fusion": "ACTG1--TPT1", "Left Breakpoint": "chr17:81511223:-", "Left Gene": "ACTG1", "Right Breakpoint": "chr13:45337207:-", "Right Gene": "TPT1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr12--chr16]", "Fusion": "ADCY6--PRSS21", "Left Breakpoint": "chr12:48776321:-", "Left Gene": "ADCY6", "Right Breakpoint": "chr16:2821154:+", "Right Gene": "PRSS21", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"DEEPEST2019\",\"TumorFusionsNAR2018\",\"TCGA_StarF2019\",\"CCLE_StarF2019\"];INTRACHROMOSOMAL[chr7:0.05Mb];LOCAL_REARRANGEMENT:-:[49197]", "Fusion": "AGMO--MEOX2", "Left Breakpoint": "chr7:15544772:-", "Left Gene": "AGMO", "Right Breakpoint": "chr7:15612611:-", "Right Gene": "MEOX2", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr7--chr10]", "Fusion": "AHCYL2--DENND10", "Left Breakpoint": "chr7:129405213:+", "Left Gene": "AHCYL2", "Right Breakpoint": "chr10:119136619:+", "Right Gene": "DENND10", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr12:0.57Mb]", "Fusion": "ALX1--NTS", "Left Breakpoint": "chr12:85286981:+", "Left Gene": "ALX1", "Right Breakpoint": "chr12:85874273:+", "Right Gene": "NTS", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr12--chr8]", "Fusion": "ANAPC5--EEF1D", "Left Breakpoint": "chr12:121335533:-", "Left Gene": "ANAPC5", "Right Breakpoint": "chr8:143586852:-", "Right Gene": "EEF1D", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr2:135.38Mb]", "Fusion": "ANKMY1--MRPS9", "Left Breakpoint": "chr2:240552914:-", "Left Gene": "ANKMY1", "Right Breakpoint": "chr2:105088984:+", "Right Gene": "MRPS9", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr4--chr3]", "Fusion": "ANKRD17--DNAJC19", "Left Breakpoint": "chr4:73090667:-", "Left Gene": "ANKRD17", "Right Breakpoint": "chr3:180985996:-", "Right Gene": "DNAJC19", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr9:1.65Mb]", "Fusion": "ANKRD20A1--ENSG00000290971", "Left Breakpoint": "chr9:67910121:+", "Left Gene": "ANKRD20A1", "Right Breakpoint": "chr9:66118819:-", "Right Gene": "ENSG00000290971", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr3--chr4]", "Fusion": "BDH1--CENPU", "Left Breakpoint": "chr3:197546361:-", "Left Gene": "BDH1", "Right Breakpoint": "chr4:184700881:-", "Right Gene": "CENPU", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr9:27.54Mb]", "Fusion": "ANKRD20A2P--ANKRD20A1", "Left Breakpoint": "chr9:40274128:+", "Left Gene": "ANKRD20A2P", "Right Breakpoint": "chr9:67893436:+", "Right Gene": "ANKRD20A1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr9:1.68Mb]", "Fusion": "ANKRD20A3P--ANKRD20A1", "Left Breakpoint": "chr9:66102178:-", "Left Gene": "ANKRD20A3P", "Right Breakpoint": "chr9:67893436:+", "Right Gene": "ANKRD20A1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr9:25.79Mb]", "Fusion": "ANKRD20A3P--ANKRD20A2P", "Left Breakpoint": "chr9:66102178:-", "Left Gene": "ANKRD20A3P", "Right Breakpoint": "chr9:40257420:+", "Right Gene": "ANKRD20A2P", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"DEEPEST2019\"];INTRACHROMOSOMAL[chr5:0.20Mb]", "Fusion": "ARL15--NDUFS4", "Left Breakpoint": "chr5:54113202:-", "Left Gene": "ARL15", "Right Breakpoint": "chr5:53646233:+", "Right Gene": "NDUFS4", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr7--chr17]", "Fusion": "ARPC1B--AARSD1", "Left Breakpoint": "chr7:99391067:+", "Left Gene": "ARPC1B", "Right Breakpoint": "chr17:42964149:-", "Right Gene": "AARSD1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr2--chr19]", "Fusion": "ASDURF--HNRNPM", "Left Breakpoint": "chr2:189661610:+", "Left Gene": "ASDURF", "Right Breakpoint": "chr19:8485603:+", "Right Gene": "HNRNPM", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr2--chr19]", "Fusion": "ASNSD1--HNRNPM", "Left Breakpoint": "chr2:189661610:+", "Left Gene": "ASNSD1", "Right Breakpoint": "chr19:8485603:+", "Right Gene": "HNRNPM", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr18:14.92Mb]", "Fusion": "ATP5F1A--DSC1", "Left Breakpoint": "chr18:46098172:-", "Left Gene": "ATP5F1A", "Right Breakpoint": "chr18:31143791:-", "Right Gene": "DSC1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr6--chr20]", "Fusion": "BCKDHB--PSMA7", "Left Breakpoint": "chr6:80344758:+", "Left Gene": "BCKDHB", "Right Breakpoint": "chr20:62136949:-", "Right Gene": "PSMA7", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"MAP2K4:Oncogene\",\"MAP2K4:ArcherDX_panel\",\"MAP2K4:FoundationOne_panel\"];INTERCHROMOSOMAL[chr21--chr17]", "Fusion": "ENSG00000280145--MAP2K4", "Left Breakpoint": "chr21:6666429:-", "Left Gene": "ENSG00000280145", "Right Breakpoint": "chr17:12081356:+", "Right Gene": "MAP2K4", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr14--chr4]", "Fusion": "ENSG00000282885--CEP44", "Left Breakpoint": "chr14:49862657:-", "Left Gene": "ENSG00000282885", "Right Breakpoint": "chr4:174318855:+", "Right Gene": "CEP44", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr14--chr17]", "Fusion": "ENSG00000282885--SNHG29", "Left Breakpoint": "chr14:49862681:-", "Left Gene": "ENSG00000282885", "Right Breakpoint": "chr17:16441719:+", "Right Gene": "SNHG29", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr4--chr16]", "Fusion": "H2AZ1--COX4I1", "Left Breakpoint": "chr4:99948120:-", "Left Gene": "H2AZ1", "Right Breakpoint": "chr16:85806788:+", "Right Gene": "COX4I1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr9:1.85Mb]", "Fusion": "ENSG00000309428--ZNG1E", "Left Breakpoint": "chr9:63817907:+", "Left Gene": "ENSG00000309428", "Right Breakpoint": "chr9:65668943:+", "Right Gene": "ZNG1E", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr3:0.18Mb]", "Fusion": "ENSG00000309799--LINC02008", "Left Breakpoint": "chr3:81809941:+", "Left Gene": "ENSG00000309799", "Right Breakpoint": "chr3:82042725:+", "Right Gene": "LINC02008", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr3:0.18Mb]", "Fusion": "ENSG00000309799--LINC02008", "Left Breakpoint": "chr3:81810037:+", "Left Gene": "ENSG00000309799", "Right Breakpoint": "chr3:82185297:+", "Right Gene": "LINC02008", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr12--chr9]", "Fusion": "ERGIC2--SURF4", "Left Breakpoint": "chr12:29371534:-", "Left Gene": "ERGIC2", "Right Breakpoint": "chr9:133366028:-", "Right Gene": "SURF4", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr9--chr3]", "Fusion": "FAM88B--NIT2", "Left Breakpoint": "chr9:62897734:+", "Left Gene": "FAM88B", "Right Breakpoint": "chr3:100352404:+", "Right Gene": "NIT2", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chrX--chr10]", "Fusion": "FTX--CCSER2", "Left Breakpoint": "chrX:74280394:-", "Left Gene": "FTX", "Right Breakpoint": "chr10:84513449:+", "Right Gene": "CCSER2", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr21--chrX]", "Fusion": "GART--UBA1", "Left Breakpoint": "chr21:33530759:-", "Left Gene": "GART", "Right Breakpoint": "chrX:47209623:+", "Right Gene": "UBA1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr7--chr14]", "Fusion": "GTF2I--SUPT16H", "Left Breakpoint": "chr7:74691111:+", "Left Gene": "GTF2I", "Right Breakpoint": "chr14:21366529:-", "Right Gene": "SUPT16H", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr5:1.20Mb]", "Fusion": "GUSBP13--ENSG00000296329", "Left Breakpoint": "chr5:69916255:+", "Left Gene": "GUSBP13", "Right Breakpoint": "chr5:71226154:-", "Right Gene": "ENSG00000296329", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr4--chr19]", "Fusion": "H2AZ1--TLE5", "Left Breakpoint": "chr4:99948895:-", "Left Gene": "H2AZ1", "Right Breakpoint": "chr19:3061257:-", "Right Gene": "TLE5", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr14--chr17]", "Fusion": "ENSG00000282885--SNHG29", "Left Breakpoint": "chr14:49862619:-", "Left Gene": "ENSG00000282885", "Right Breakpoint": "chr17:16441711:+", "Right Gene": "SNHG29", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr6--chr12]", "Fusion": "H3C2--ARHGDIB", "Left Breakpoint": "chr6:26031776:-", "Left Gene": "H3C2", "Right Breakpoint": "chr12:14961627:-", "Right Gene": "ARHGDIB", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr20--chr11]", "Fusion": "HM13--CHORDC1", "Left Breakpoint": "chr20:31544991:+", "Left Gene": "HM13", "Right Breakpoint": "chr11:90201888:-", "Right Gene": "CHORDC1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"HMGB1:Oncogene\"];INTERCHROMOSOMAL[chr13--chr11]", "Fusion": "HMGB1--BSCL2", "Left Breakpoint": "chr13:30461357:-", "Left Gene": "HMGB1", "Right Breakpoint": "chr11:62707324:-", "Right Gene": "BSCL2", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr12--chr20]", "Fusion": "HNRNPA1--RRBP1", "Left Breakpoint": "chr12:54284882:+", "Left Gene": "HNRNPA1", "Right Breakpoint": "chr20:17614796:-", "Right Gene": "RRBP1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"UBE2D2:Oncogene\"];INTRACHROMOSOMAL[chr5:39.99Mb]", "Fusion": "HNRNPH1--UBE2D2", "Left Breakpoint": "chr5:179634065:-", "Left Gene": "HNRNPH1", "Right Breakpoint": "chr5:139600372:+", "Right Gene": "UBE2D2", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr19--chr2]", "Fusion": "HNRNPM--EIF5B", "Left Breakpoint": "chr19:8462606:+", "Left Gene": "HNRNPM", "Right Breakpoint": "chr2:99361602:+", "Right Gene": "EIF5B", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr19--chr20]", "Fusion": "HNRNPM--YWHAB", "Left Breakpoint": "chr19:8486197:+", "Left Gene": "HNRNPM", "Right Breakpoint": "chr20:44885787:+", "Right Gene": "YWHAB", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"IFNAR1:Oncogene\"];INTERCHROMOSOMAL[chr21--chr12]", "Fusion": "IFNAR1--FAM234B", "Left Breakpoint": "chr21:33355735:+", "Left Gene": "IFNAR1", "Right Breakpoint": "chr12:13082243:+", "Right Gene": "FAM234B", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr8--chrX]", "Fusion": "INTS10--EIF2S3", "Left Breakpoint": "chr8:19824223:+", "Left Gene": "INTS10", "Right Breakpoint": "chrX:24077310:+", "Right Gene": "EIF2S3", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr9:1.85Mb]", "Fusion": "ENSG00000309428--ZNG1E", "Left Breakpoint": "chr9:63817911:+", "Left Gene": "ENSG00000309428", "Right Breakpoint": "chr9:65668716:+", "Right Gene": "ZNG1E", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr9:1.85Mb]", "Fusion": "ENSG00000309428--ZNG1E", "Left Breakpoint": "chr9:63817949:+", "Left Gene": "ENSG00000309428", "Right Breakpoint": "chr9:65679036:+", "Right Gene": "ZNG1E", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr9:4.41Mb]", "Fusion": "ENSG00000309428--ZNG1C", "Left Breakpoint": "chr9:63818694:+", "Left Gene": "ENSG00000309428", "Right Breakpoint": "chr9:68232053:+", "Right Gene": "ZNG1C", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr9:4.41Mb]", "Fusion": "ENSG00000309428--ZNG1C", "Left Breakpoint": "chr9:63817923:+", "Left Gene": "ENSG00000309428", "Right Breakpoint": "chr9:68232008:+", "Right Gene": "ZNG1C", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr14--chr17]", "Fusion": "ENSG00000282885--SNHG29", "Left Breakpoint": "chr14:49862616:-", "Left Gene": "ENSG00000282885", "Right Breakpoint": "chr17:16441695:+", "Right Gene": "SNHG29", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr14--chr17]", "Fusion": "ENSG00000282885--SNHG29", "Left Breakpoint": "chr14:49862627:-", "Left Gene": "ENSG00000282885", "Right Breakpoint": "chr17:16441619:+", "Right Gene": "SNHG29", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr14--chr17]", "Fusion": "ENSG00000282885--SNHG29", "Left Breakpoint": "chr14:49862619:-", "Left Gene": "ENSG00000282885", "Right Breakpoint": "chr17:16441707:+", "Right Gene": "SNHG29", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr1:136.00Mb]", "Fusion": "ENSG00000290683--CEPT1", "Left Breakpoint": "chr1:247202016:-", "Left Gene": "ENSG00000290683", "Right Breakpoint": "chr1:111159380:+", "Right Gene": "CEPT1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr16:6.58Mb]", "Fusion": "ENSG00000291073--XPO6", "Left Breakpoint": "chr16:21519828:-", "Left Gene": "ENSG00000291073", "Right Breakpoint": "chr16:28125848:-", "Right Gene": "XPO6", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr4--chr14]", "Fusion": "ENSG00000295039--NPAS3", "Left Breakpoint": "chr4:44732178:+", "Left Gene": "ENSG00000295039", "Right Breakpoint": "chr14:33215182:+", "Right Gene": "NPAS3", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr5:1.12Mb]", "Fusion": "ENSG00000295602--ENSG00000296329", "Left Breakpoint": "chr5:69916255:+", "Left Gene": "ENSG00000295602", "Right Breakpoint": "chr5:71226154:-", "Right Gene": "ENSG00000296329", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"SOX5:Oncogene\"];INTRACHROMOSOMAL[chr12:0.05Mb];NEIGHBORS[54845]", "Fusion": "ENSG00000296761--SOX5", "Left Breakpoint": "chr12:24617603:-", "Left Gene": "ENSG00000296761", "Right Breakpoint": "chr12:24407566:-", "Right Gene": "SOX5", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr3:0.32Mb]", "Fusion": "ENSG00000297708--LSAMP-AS1", "Left Breakpoint": "chr3:115810499:+", "Left Gene": "ENSG00000297708", "Right Breakpoint": "chr3:116299578:+", "Right Gene": "LSAMP-AS1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr3:0.32Mb]", "Fusion": "ENSG00000297708--LSAMP-AS1", "Left Breakpoint": "chr3:115810499:+", "Left Gene": "ENSG00000297708", "Right Breakpoint": "chr3:116299503:+", "Right Gene": "LSAMP-AS1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr3:0.20Mb]", "Fusion": "ENSG00000297753--LSAMP-AS1", "Left Breakpoint": "chr3:116068033:+", "Left Gene": "ENSG00000297753", "Right Breakpoint": "chr3:116299635:+", "Right Gene": "LSAMP-AS1", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "[\"ELAVL1:Oncogene\"];INTERCHROMOSOMAL[chr5--chr19]", "Fusion": "ENSG00000298637--ELAVL1", "Left Breakpoint": "chr5:116705069:-", "Left Gene": "ENSG00000298637", "Right Breakpoint": "chr19:7991831:-", "Right Gene": "ELAVL1", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr5:0.26Mb]", "Fusion": "ENSG00000299385--ENSG00000308925", "Left Breakpoint": "chr5:86506759:-", "Left Gene": "ENSG00000299385", "Right Breakpoint": "chr5:86246113:-", "Right Gene": "ENSG00000308925", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr5:0.26Mb]", "Fusion": "ENSG00000299385--ENSG00000308925", "Left Breakpoint": "chr5:86506759:-", "Left Gene": "ENSG00000299385", "Right Breakpoint": "chr5:86217150:-", "Right Gene": "ENSG00000308925", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr3--chr9]", "Fusion": "ENSG00000306736--ECPAS", "Left Breakpoint": "chr3:189623317:+", "Left Gene": "ENSG00000306736", "Right Breakpoint": "chr9:111390101:-", "Right Gene": "ECPAS", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr11:0.30Mb]", "Fusion": "ENSG00000307422--ENSG00000303527", "Left Breakpoint": "chr11:81213450:-", "Left Gene": "ENSG00000307422", "Right Breakpoint": "chr11:80912368:-", "Right Gene": "ENSG00000303527", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr6--chr15]", "Fusion": "ENSG00000307816--INO80", "Left Breakpoint": "chr6:28738572:+", "Left Gene": "ENSG00000307816", "Right Breakpoint": "chr15:41096353:-", "Right Gene": "INO80", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr9:4.41Mb]", "Fusion": "ENSG00000309428--ZNG1C", "Left Breakpoint": "chr9:63817907:+", "Left Gene": "ENSG00000309428", "Right Breakpoint": "chr9:68235000:+", "Right Gene": "ZNG1C", "Splice Type": "ONLY_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTRACHROMOSOMAL[chr9:4.41Mb]", "Fusion": "ENSG00000309428--ZNG1C", "Left Breakpoint": "chr9:63817911:+", "Left Gene": "ENSG00000309428", "Right Breakpoint": "chr9:68231997:+", "Right Gene": "ZNG1C", "Splice Type": "INCL_NON_REF_SPLICE" }, { "# Long Reads": "2", "Annotations": "INTERCHROMOSOMAL[chr19--chr18]", "Fusion": "ZNF8-DT--DSG3", "Left Breakpoint": "chr19:58278523:-", "Left Gene": "ZNF8-DT", "Right Breakpoint": "chr18:31456993:+", "Right Gene": "DSG3", "Splice Type": "ONLY_REF_SPLICE" } ] }