FastQCFastQC Report
Wed 20 May 2026
CR1528_L6647-0003-0016_S58_L001_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCR1528_L6647-0003-0016_S58_L001_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17893443
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGGTCGCTGTTCAATACATCGGACGATTCGACGGTCGCGACCGTAGCC562500.31436096451644324No Hit
CAAGGTCGCTGTTCAATACATCGGATTTCGACGCGTCGATTCGGCGAGCC561100.3135785550047579No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGAGAGAAATCTGGGGG529700.29603022738552887TruSeq Adapter, Index 2 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGAGAGAAATCTGGGGT410130.22920686644822913TruSeq Adapter, Index 2 (97% over 36bp)
ATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCTCAATTGGTCG374010.20902070104674655No Hit
GCTGAACCAATGGGACCAAGCTTCACACCGAGTTCATCGCTTATGTGTTC357840.19998387118678054No Hit
AGACAGCTGCTGAACCAATGGGACCAAGCTTCACACCGAGTTCATCGCTT348720.19488703208208727No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCGAGAGAAATCTGGGG325670.1820052183361246TruSeq Adapter, Index 2 (97% over 36bp)
ATAGACAGCTGCTGAACCAATGGGACCAAGCTTCACACCGAGTTCATCGC254780.14238735384799894No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGAGAGAAATCTGGTGT250360.13991717524682087TruSeq Adapter, Index 2 (97% over 36bp)
GATAGACAGCTGCTGAACCAATGGGACCAAGCTTCACACCGAGTTCATCG227910.12737067986300904No Hit
CAAGGTCGCTGTTCAATACATCGGACGACGTTAACGCGTTTCGTACGGCC203520.11373998844157605No Hit
CAAGGTCGCTGTTCAATACATCGGACGATACGCCGATCGATCGTCGGGCC203120.11351644286680881No Hit
CAAGGTCGCTGTTCAATACATCGGACGCATATCGCGTCGTACGACCGGCC200000.11177278738362427No Hit
CAAGGTCGCTGTTCAATACATCGGAGTCGCGAACTATCGTCGATTCGGCC193150.10794456941573514No Hit
CAAGGTCGCTGTTCAATACATCGGACCGCGCGTATAGTCCGAGCGTAGCC190060.10621767985065814No Hit
CAAGGTCGCTGTTCAATACATCGGATTATCGCGTCGCGACGGACGTAGCC188820.10552468856887967No Hit
CAAGGTCGCTGTTCAATACATCGGACGCGACTATCGCGCGTAACGCGGCC186930.10446843572810444No Hit
CAAGGTCGCTGTTCAATACATCGGATATCGCGCGAAACGACCGTTCGGCC186910.10445725844936607No Hit
CAAGGTCGCTGTTCAATACATCGGATCGACGCGTAAACGGTACGTCGGCC184850.10330599873931473No Hit
CAAGGTCGCTGTTCAATACATCGGACCGCGCGATAAGACGCGTAACGGCC183890.10276948935987334No Hit
CAAGGTCGCTGTTCAATACATCGGACGCGAAATTCGTATACGCGTCGGCC179700.10042784946418641No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)