FastQCFastQC Report
Thu 21 May 2026
CR1519_L6647-0003-0007_S49_L001_trimmed_1P.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCR1519_L6647-0003-0007_S49_L001_trimmed_1P.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17757773
Sequences flagged as poor quality0
Sequence length36-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGAGGCCTGCCCCCGCTAACCGGCTTTTTGCCCAAATGGGCCATTATCG247540.1393981103373717No Hit
AGGGTCTTCTCGTCTTGCTGTGTCATGCCCGCCTCTTCACGGGCAGGTCA242990.13683585210825705No Hit
AGGGGTCCCTTGACCACCATCCTCCGTGAAATCAATATCCCGCACAAGAG219210.12344453327565344No Hit
AGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTCTACCCTCCCTTAGCAG206600.11634341761210709No Hit
TGCCAGCCACCATGAATATTGCACGGTACCATAAATACTTGACCACCTGT198440.11174824681000259No Hit
AGGGCGAAGGGGCCTGCGGCGTATTCGATGTTGAAGCCTGAGACTAGTTC183960.10359407117097397No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)