FastQCFastQC Report
Wed 20 May 2026
CR1513_L6647-0003-0001_S43_L001_trimmed_1P.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCR1513_L6647-0003-0001_S43_L001_trimmed_1P.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13068547
Sequences flagged as poor quality0
Sequence length36-151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGAATACGATCTGGGGGG885020.6772137713549946TruSeq Adapter, Index 22 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGAATACGATCTGGGGGGGGG738360.5649901247629135TruSeq Adapter, Index 22 (97% over 37bp)
GCTGAACCAATGGGACCAAGCTTCACACCGAGTTCATCGCTTATGTGTTC466600.3570404575198758No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGAATACGATCTGGGGGGG456640.34941910527620246TruSeq Adapter, Index 22 (97% over 37bp)
CAAGGTCGCTGTTCAATACATCGGATATCGCGCGAAACGACCGTTCGGCC436340.33388562630566354No Hit
CAAGGTCGCTGTTCAATACATCGGAGTGATATCGCGTTAACGTCGCGGCC327260.25041804570928966No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGAATACGATCTGGGGGGGGGG288080.22043766610014104TruSeq Adapter, Index 22 (97% over 37bp)
CAAGGTCGCTGTTCAATACATCGGATTATCGCGTCGCGACGGACGTAGCC209730.16048455884192786No Hit
GAACCAATGGGACCAAGCTTCACACCGAGTTCATCGCTTATGTGTTCGAC207850.15904599034613412No Hit
AGACAGCTGCTGAACCAATGGGACCAAGCTTCACACCGAGTTCATCGCTT201030.15382735356883975No Hit
ATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCTCAATTGGTCG197710.15128690282094864No Hit
CAAGGTCGCTGTTCAATACATCGGACGATCGTACGATAGCGTACCGAGCC179820.13759754623065593No Hit
GATAGACAGCTGCTGAACCAATGGGACCAAGCTTCACACCGAGTTCATCG177640.1359294189323419No Hit
CAAGGTCGCTGTTCAATACATCGGACGCATATCGCGTCGTACGACCGGCC148680.11376934252905085No Hit
TGCTGAACCAATGGGACCAAGCTTCACACCGAGTTCATCGCTTATGTGTT147160.11260624459628144No Hit
CAAGGTCGCTGTTCAATACATCGGAGTCGCGAACTATCGTCGATTCGGCC146410.11203234758998074No Hit
CAAGGTCGCTGTTCAATACATCGGACCGCGCGTATAGTCCGAGCGTAGCC146090.11178748486729242No Hit
CAAGGTCGCTGTTCAATACATCGGACGATACGCCGATCGATCGTCGGGCC144740.11075447025595117No Hit
CAAGGTCGCTGTTCAATACATCGGACGACGTTAACGCGTTTCGTACGGCC137280.10504610803328022No Hit
CAAGGTCGCTGTTCAATACATCGGACCGCGCGATAAGACGCGTAACGGCC133900.10245974552488504No Hit
CAAGGTCGCTGTTCAATACATCGGACCGCGCGTAATGCGCGACGTTAGCC133330.10202358380009653No Hit
TGAACCAATGGGACCAAGCTTCACACCGAGTTCATCGCTTATGTGTTCGA133270.10197767203959246No Hit
CAAGGTCGCTGTTCAATACATCGGACCGCGATACGACTCGTTCGTCGGCC133140.10187819655850035No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)