FastQCFastQC Report
Wed 20 May 2026
CR1513_L6647-0003-0001_S43_L001_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCR1513_L6647-0003-0001_S43_L001_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13613718
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGAATACGATCTGGGGG3085132.2661920865409435TruSeq Adapter, Index 22 (97% over 37bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCGAATACGATCTGGGG558680.410380176818706TruSeq Adapter, Index 22 (97% over 37bp)
CAAGGTCGCTGTTCAATACATCGGATATCGCGCGAAACGACCGTTCGGCC551760.40529706873610866No Hit
GCTGAACCAATGGGACCAAGCTTCACACCGAGTTCATCGCTTATGTGTTC480840.35320255642139786No Hit
CAAGGTCGCTGTTCAATACATCGGAGTGATATCGCGTTAACGTCGCGGCC398090.2924182798556574No Hit
GAATCGGAAGAGCACACGTCTGAACTCCAGTCACCGAATACGATCTGGGG248980.18288905352674412TruSeq Adapter, Index 2 (97% over 36bp)
AGACAGCTGCTGAACCAATGGGACCAAGCTTCACACCGAGTTCATCGCTT214970.15790689949652256No Hit
GAACCAATGGGACCAAGCTTCACACCGAGTTCATCGCTTATGTGTTCGAC214630.15765715141153944No Hit
CAAGGTCGCTGTTCAATACATCGGATTATCGCGTCGCGACGGACGTAGCC213880.1571062365181944No Hit
ATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCTCAATTGGTCG202130.14847523652245478No Hit
CAAGGTCGCTGTTCAATACATCGGACGATCGTACGATAGCGTACCGAGCC183120.1345113803591348No Hit
GATAGACAGCTGCTGAACCAATGGGACCAAGCTTCACACCGAGTTCATCG179780.13205797270077138No Hit
CAAGGTCGCTGTTCAATACATCGGACGCATATCGCGTCGTACGACCGGCC152470.11199732505109919No Hit
CAAGGTCGCTGTTCAATACATCGGACCGCGCGTATAGTCCGAGCGTAGCC152060.11169615824273722No Hit
CAAGGTCGCTGTTCAATACATCGGAGTCGCGAACTATCGTCGATTCGGCC150730.1107192024985386No Hit
TGCTGAACCAATGGGACCAAGCTTCACACCGAGTTCATCGCTTATGTGTT150300.11040334462635411No Hit
CAAGGTCGCTGTTCAATACATCGGACGATACGCCGATCGATCGTCGGGCC149580.10987446632874283No Hit
CAAGGTCGCTGTTCAATACATCGGACGACGTTAACGCGTTTCGTACGGCC142370.10457833782071878No Hit
CAAGGTCGCTGTTCAATACATCGGACCGCGCGTAATGCGCGACGTTAGCC138510.10174296250296942No Hit
CAAGGTCGCTGTTCAATACATCGGACCGCGCGATAAGACGCGTAACGGCC137410.10093495399272998No Hit
CAAGGTCGCTGTTCAATACATCGGACCGCGATACGACTCGTTCGTCGGCC137280.1008394620778835No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)