FastQCFastQC Report
Tue 22 Apr 2025
CR1458_17111FL-70-01-19_S19_L007_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCR1458_17111FL-70-01-19_S19_L007_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22077900
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGAGGCCTGCCCCCGCTAACCGGCTTTTTGCCCAAATGGGCCATTATCG390440.17684652978770626No Hit
AGGGTCTTCTCGTCTTGCTGTGTCATGCCCGCCTCTTCACGGGCAGGTCA358330.16230257406727996No Hit
AGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTCTACCCTCCCTTAGCAG358000.16215310332957392No Hit
AGGGGTCCCTTGACCACCATCCTCCGTGAAATCAATATCCCGCACAAGAG345660.15656380362262717No Hit
AGGGTGCTCCGGCTCCAGCGTCTCGCAATGCTATCGCGTGCACACCCCCC313940.1421964951376716No Hit
AGGGGGTTGTTTGATCCCGTTTCGTGCAAGAATAGGAGGTGGAGTGCTGC308070.1395377277730219No Hit
AGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTACAGAAC275910.12497112497112496No Hit
TGCCAGCCACCATGAATATTGCACGGTACCATAAATACTTGACCACCTGT271980.12319106436753495No Hit
AGGGCAAGGACGCCTCCTAGTTTGTTAGGGACGGATCGGAGAATTGTGTA271290.12287853464324051No Hit
AGGGAGAGCTGGGTTGTTTGGGTTGTGGCTCAGTGTCAGTTCGAGATAAT269620.12212212212212212No Hit
AGGGCGAAGGGGCCTGCGGCGTATTCGATGTTGAAGCCTGAGACTAGTTC255800.11586246880364527No Hit
AGGGCTCAGAGCACTGCAGCAGATCATTTCATATTGCTTCCGTGGAGTGT251240.11379705497352556No Hit
AGGGTGATAGACCTGTGATCCATCGTGATGTCTTATTTAAGGGGAACGTG245150.11103864045040517No Hit
AGGGATGGGAGGGCGATGAGGACTAGGATGATGGCGGGCAGGATAGTTCA242250.10972510972510972No Hit
AGGGACGGATCGGAGAATTGTGTAGGCGAATAGGAAATATCATTCGGGCT237690.10765969589499001No Hit
AGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAA235510.10667228314287139No Hit
AGGGCTGCAATAATGAAGGGCAAGATGAAGTGAAAGGTAAAGAATCGTGT229160.1037961037961038No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)