FastQCFastQC Report
Mon 3 Mar 2025
CR1439_S32_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCR1439_S32_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8923093
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCAGTATATCTGGGGGG284790.31916063185713744TruSeq Adapter, Index 18 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCAGTATATCTAGGGGG102520.11489289644297106TruSeq Adapter, Index 18 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)