FastQCFastQC Report
Mon 3 Mar 2025
CR1422_S15_trimmed_1P.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCR1422_S15_trimmed_1P.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9662078
Sequences flagged as poor quality0
Sequence length36-51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCAGCCACCATGAATATTGCACGGTACCATAAATACTTGACCACCTGTA183160.18956584701551776No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCTATGCAATCTGGGGGG112750.11669332414828364TruSeq Adapter, Index 22 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)