FastQCFastQC Report
Mon 3 Mar 2025
CR1422_S15_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCR1422_S15_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9769995
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCAGCCACCATGAATATTGCACGGTACCATAAATACTTGACCACCTGTA209920.2148619318638341No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG196660.20128976524552983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)