FastQCFastQC Report
Tue 31 Dec 2024
CR1399_17111FL-64-01-16_S16_L001_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCR1399_17111FL-64-01-16_S16_L001_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23840207
Sequences flagged as poor quality0
Sequence length151
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGAGGCCTGCCCCCGCTAACCGGCTTTTTGCCCAAATGGGCCATTATCG439540.18436920451236016No Hit
AGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTCTACCCTCCCTTAGCAG365550.15333340016720493No Hit
AGGGGTCCCTTGACCACCATCCTCCGTGAAATCAATATCCCGCACAAGAG357630.15001128136177677No Hit
AGGGTCTTCTCGTCTTGCTGTGTCATGCCCGCCTCTTCACGGGCAGGTCA353020.1480775733197283No Hit
AGGGTGCTCCGGCTCCAGCGTCTCGCAATGCTATCGCGTGCACACCCCCC286050.1199863742793844No Hit
AGGGAGAGCTGGGTTGTTTGGGTTGTGGCTCAGTGTCAGTTCGAGATAAT273860.11487316364325191No Hit
AGGCTGAGCAAGAGGTGGTGAGGTTGATCGGGGTTTATCGATTACAGAAC271390.11383709881378128No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG270910.11363575828011896No Hit
AGGGGGTTGTTTGATCCCGTTTCGTGCAAGAATAGGAGGTGGAGTGCTGC259240.10874066655545399No Hit
AGGGCGAAGGGGCCTGCGGCGTATTCGATGTTGAAGCCTGAGACTAGTTC248030.10403852617554873No Hit
AGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCACCTCT245420.1029437370237599No Hit
TGCCAGCCACCATGAATATTGCACGGTACCATAAATACTTGACCACCTGT244930.1027382018956463No Hit
AGGGTGATAGACCTGTGATCCATCGTGATGTCTTATTTAAGGGGAACGTG242840.10186153165532498No Hit
AGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAA239740.10056120737542253No Hit
AGGGCTCAGAGCACTGCAGCAGATCATTTCATATTGCTTCCGTGGAGTGT239610.10050667764755566No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)