FastQCFastQC Report
Tue 31 Dec 2024
CR1389_17111FL-64-01-06_S6_L001_trimmed_1P.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCR1389_17111FL-64-01-06_S6_L001_trimmed_1P.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19729043
Sequences flagged as poor quality0
Sequence length36-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGGTCGCTGTTCAATACATCGGACCGCGATACGACTCGTTCGTCGGCC465930.2361645215127769No Hit
CAAGGTCGCTGTTCAATACATCGGACCGCGCGTAATGCGCGACGTTAGCC389470.19740947394153888No Hit
GCTGAACCAATGGGACCAAGCTTCACACCGAGTTCATCGCTTATGTGTTC302200.15317519455961448No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCATATCCAATCTGGGGG226270.11468878647585692TruSeq Adapter, Index 7 (97% over 39bp)
TGCCAGCCACCATGAATATTGCACGGTACCATAAATACTTGACCACCTGT221850.11244843452366138No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)