FastQCFastQC Report
Tue 31 Dec 2024
CR1387_17111FL-64-01-04_S4_L001_trimmed_1P.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCR1387_17111FL-64-01-04_S4_L001_trimmed_1P.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32835243
Sequences flagged as poor quality0
Sequence length36-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGAGGCCTGCCCCCGCTAACCGGCTTTTTGCCCAAATGGGCCATTATCG577030.17573495649171836No Hit
AGGGGTCCCTTGACCACCATCCTCCGTGAAATCAATATCCCGCACAAGAG542300.16515790670408623No Hit
AGGGTCTTCTCGTCTTGCTGTGTCATGCCCGCCTCTTCACGGGCAGGTCA539330.1642533907850172No Hit
AGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTCTACCCTCCCTTAGCAG526940.16048000619334535No Hit
AGGGTGCTCCGGCTCCAGCGTCTCGCAATGCTATCGCGTGCACACCCCCC402130.12246901903543092No Hit
TGCCAGCCACCATGAATATTGCACGGTACCATAAATACTTGACCACCTGT360170.10969006685895397No Hit
AGGGCGAAGGGGCCTGCGGCGTATTCGATGTTGAAGCCTGAGACTAGTTC358290.10911751132769142No Hit
AGGGGGTTGTTTGATCCCGTTTCGTGCAAGAATAGGAGGTGGAGTGCTGC330320.10059922504608843No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)