FastQCFastQC Report
Mon 25 Nov 2024
CR1301_17111FL-61-01-22_S116_L006_trimmed_1P.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCR1301_17111FL-61-01-22_S116_L006_trimmed_1P.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15807571
Sequences flagged as poor quality0
Sequence length36-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTCTTCTCGTCTTGCTGTGTCATGCCCGCCTCTTCACGGGCAGGTCA192070.12150506867879955No Hit
AGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTCTACCCTCCCTTAGCAG184440.1166782676478252No Hit
AGGAGGCCTGCCCCCGCTAACCGGCTTTTTGCCCAAATGGGCCATTATCG183050.11579894216511821No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)