FastQCFastQC Report
Mon 25 Nov 2024
CR1283_17111FL-61-01-04_S98_L006_trimmed_1P.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCR1283_17111FL-61-01-04_S98_L006_trimmed_1P.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9523885
Sequences flagged as poor quality0
Sequence length36-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGAGGCCTGCCCCCGCTAACCGGCTTTTTGCCCAAATGGGCCATTATCG168960.17740659405274214No Hit
AGTGGAGGCCGGAGCAGGAACAGGTTGAACAGTCTACCCTCCCTTAGCAG160860.168901661454333No Hit
AGGGTCTTCTCGTCTTGCTGTGTCATGCCCGCCTCTTCACGGGCAGGTCA153900.16159371936977399No Hit
AGGGTGCTCCGGCTCCAGCGTCTCGCAATGCTATCGCGTGCACACCCCCC153020.16066972669241597No Hit
AGGGGTCCCTTGACCACCATCCTCCGTGAAATCAATATCCCGCACAAGAG145370.152637290349474No Hit
TGCCAGCCACCATGAATATTGCACGGTACCATAAATACTTGACCACCTGT128830.13527042798185826No Hit
AGGGCAAGGACGCCTCCTAGTTTGTTAGGGACGGATCGGAGAATTGTGTA114410.12012954797333232No Hit
AGGGGGTTGTTTGATCCCGTTTCGTGCAAGAATAGGAGGTGGAGTGCTGC112020.11762006786096219No Hit
AGTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAA111940.11753606852665692No Hit
AGGGTGATAGACCTGTGATCCATCGTGATGTCTTATTTAAGGGGAACGTG109330.1147955902449473No Hit
AGGGCTCAGAGCACTGCAGCAGATCATTTCATATTGCTTCCGTGGAGTGT105370.11063762319683616No Hit
AGGGCGAAGGGGCCTGCGGCGTATTCGATGTTGAAGCCTGAGACTAGTTC104050.10925163418079911No Hit
AGGGCTGCAATAATGAAGGGCAAGATGAAGTGAAAGGTAAAGAATCGTGT97880.10277318552250472No Hit
AGGCCTCGCCCGATGTGTAGGAAGAGGCAGATAAAGAATATTGAGGCGCC95950.10074670158238996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)