FastQCFastQC Report
Fri 13 Sep 2024
CR1263_17111FL-59-01-44_S162_L004_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameCR1263_17111FL-59-01-44_S162_L004_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13235921
Sequences flagged as poor quality0
Sequence length151
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGAGGCCTGCCCCCGCTAACCGGCTTTTTGCCCAAATGGGCCATTATCG179950.13595578275210318No Hit
AGGGAGAGCTGGGTTGTTTGGGTTGTGGCTCAGTGTCAGTTCGAGATAAT177260.13392343456870134No Hit
AGGGCTCAGAGCACTGCAGCAGATCATTTCATATTGCTTCCGTGGAGTGT173810.1313168913595057No Hit
AGGGGGTTGTTTGATCCCGTTTCGTGCAAGAATAGGAGGTGGAGTGCTGC152220.11500521950833643No Hit
AGACCAAGAAGTTATTATCTCGAACTGACACTGAGCCACAACCCAAACAA142360.10755579456843238No Hit
AGGGCTGCAATAATGAAGGGCAAGATGAAGTGAAAGGTAAAGAATCGTGT140590.1062185245741494No Hit
AGGGTAACTTGTTCCGTTGGTCAAGTTATTGGATCAATTGAGTATAGTAG133010.1004916847116268No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)