V2_TOP_400_TRANSCRIBED_MD_ENHANCERS_1kb_combrank_2kbrevintersect.bed - bed file of every enhancer target used in the IDY43 / IDY56/AY0058 screen. This can be loaded in IGV. Use this to confirm locations of guides that gave hits.
TC797_megadomains_GSE133163.bed - megadomain annotations as per the Rosencrance et al publication. All enhancers and non-positive-control genes lie within these annotations.
ensembl_v110.gtf.gz - annotation set from the CellRanger ensembl geneset. Can be loaded into IGV for an ensembl geneset.
IDY0037_guides_bwamem_sorted_v3.bed - guides designed in IDY0037 that were mapped back to the human genome. This can be loaded in IGV. (Some of them will map to more than one location and not appear in the site where they should be) (This is the FIRST set of guide pairs in AY-0058)
IDY0056_guides_bwamem_sorted.bed - guides designed in IDY0056 that were mapped back to the human genome. This can be loaded in IGV. (Some of them will map to more than one location and not appear in the site where they should be) (This is the SECOND set of guide pairs in AY-0058)